Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29260 403 / 2e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 352 / 4e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 315 / 1e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29360 313 / 1e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29370 310 / 9e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 308 / 4e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07450 303 / 3e-103 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 302 / 1e-102 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29330 301 / 3e-102 TRI tropinone reductase (.1) AT2G30670 299 / 2e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040736 [exp] 335 / 2e-115 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 334 / 4e-115 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 333 / 9e-115 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001560 [exp] 322 / 2e-108 AT5G06060 350 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 300 / 1e-101 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 299 / 3e-101 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 296 / 2e-100 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 294 / 1e-99 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3) Lus10016497 [exp] 293 / 6e-99 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G244900 [exp] 449 / 1e-159 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G059100 [exp] 343 / 7e-119 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 317 / 2e-108 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G142600 [exp] 312 / 2e-106 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G245000 [exp] 309 / 3e-105 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 308 / 5e-105 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 297 / 1e-100 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 292 / 2e-98 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 289 / 2e-97 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 236 / 6e-77 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10040730 pacid=23157763 polypeptide=Lus10040730 locus=Lus10040730.g ID=Lus10040730.BGIv1.0 annot-version=v1.0 ATGAAAATTGCCGCTACCATTTGCTTGCAAGCTTCACTGAAAATGTCTCTAGCAGTACAGAACTTGGCATGTCTTCCATTCCCACCGTCCTCTAATCTCA ACCATTGCCATTGTGGAATCACCCATCTGCAATTTCCTCACATTGCGCCATACCAATCCATTAGAACCCCTCTCCAGCCAAGAACCACCACGATTGTGCG GACCTCAAGCACAATCATCACCGGTGGAGGTAGCGGCAGGTGGAGCCTTACCGGACAAACGGCGCTCGTGACCGGAGGAACTCGCGGTATTGGGCGGGCG ATCGTACAGGAATTGGCAGGTCTCGGAGCTAGAGTGCATACATGCTGCAGGAATGGAAGTGAGCTTAGGCAGTGTTTGGAGGAATGGGACGAGCTTAGAG TCAGCGGCTCCCTCTGCGATGTATCCGTTGGTGAAAATAGGGTGGAGCTTATGAGAACTGTATCGTCTGTATTTGATGGGAAGCTCAACATTCTTGTTAA CAATGTTGGGACGAATATTCGCAAGCCGATAGAAGAGTTTACACCAGCTGAAGTTTCCACTCTAATGTCAACCAATTTTGAATCTTCTTTCCATTTAAGC CAGCTTGCATATCCGCTTCTCAAGGTTTCAGGACAAGGAAGTGTTGTTTTCACTTCTTCCGTCACTGGCTTCCAGTCGTTGAAATCAATGTCTGTTCACG GGGCAACGAAAGGAGCAATCAACCAGCTAACAAAAAGTCTGGCATGTGAGTGGGCCAAGGACAACATTAGAAGCAATGCTGTTGCACCGTGGTATATCAA GACATCAATGGTGAAGCAAGTGCTTAGCAACAAAAAGTACCTAGAGGAAGTTTACTCTAGAACTCCTCTTCGACGGTTAGGAGAGCCTACAGAAGTGTCT TCTCTGGTTGCATTCCTTTGTATGCCTGCATCGTCTTACATCACTGGGCAGATTATCTGCGTCGATGGAGGGATGTCTGTGAATGGTTTCTTCCCTAGTC ATTCGTAG
AA sequence Show only first row Show all	>Lus10040730 pacid=23157763 polypeptide=Lus10040730 locus=Lus10040730.g ID=Lus10040730.BGIv1.0 annot-version=v1.0 MKIAATICLQASLKMSLAVQNLACLPFPPSSNLNHCHCGITHLQFPHIAPYQSIRTPLQPRTTTIVRTSSTIITGGGSGRWSLTGQTALVTGGTRGIGRA IVQELAGLGARVHTCCRNGSELRQCLEEWDELRVSGSLCDVSVGENRVELMRTVSSVFDGKLNILVNNVGTNIRKPIEEFTPAEVSTLMSTNFESSFHLS QLAYPLLKVSGQGSVVFTSSVTGFQSLKSMSVHGATKGAINQLTKSLACEWAKDNIRSNAVAPWYIKTSMVKQVLSNKKYLEEVYSRTPLRRLGEPTEVS SLVAFLCMPASSYITGQIICVDGGMSVNGFFPSHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29260			NAD(P)-binding Rossmann-fold s...		Lus10040730 [exp]	0	1
AT4G14700		ORC1, ATORC1A, ...	origin recognition complex 1 (...		Lus10031848 [exp]	3.5	0.8101
AT4G33520		AtHMAC6, HMA6, ...	Arabidopsis thaliana heavy met...		Lus10023777 [exp]	4.4	0.8120
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10034828 [exp]	11.7	0.8007
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10016390 [exp]	12.0	0.7931
AT5G50110			S-adenosyl-L-methionine-depend...		Lus10043465 [exp]	18.2	0.8055
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10005207 [exp]	19.2	0.7849
AT1G71260		WHY2, ATWHY2	WHIRLY 2 (.1)		Lus10035067 [exp]	22.4	0.7726
AT2G01440			DEAD/DEAH box RNA helicase fam...		Lus10034589 [exp]	23.1	0.7905
AT4G18750		DOT4	DEFECTIVELY ORGANIZED TRIBUTAR...		Lus10015225 [exp]	23.3	0.7965
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Lus10033378 [exp]	25.0	0.7668

Compare expression of checked genes

Lus10040730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.