Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06060 306 / 4e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 298 / 5e-102 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 293 / 5e-100 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29350 292 / 1e-99 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29340 290 / 6e-99 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29290 289 / 1e-98 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29360 286 / 2e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29310 281 / 2e-95 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29330 278 / 4e-94 TRI tropinone reductase (.1) AT2G30670 270 / 4e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016499 [exp] 451 / 4e-162 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 386 / 2e-136 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 380 / 4e-134 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 366 / 9e-129 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 358 / 1e-125 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 310 / 8e-107 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040732 [exp] 296 / 3e-101 AT5G06060 269 / 7e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 292 / 2e-99 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 281 / 3e-95 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142600 [exp] 309 / 2e-106 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.013G026000 [exp] 301 / 1e-103 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G245000 [exp] 288 / 6e-98 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 286 / 2e-97 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 286 / 3e-97 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G059100 [exp] 285 / 7e-97 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 280 / 5e-94 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 269 / 3e-91 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 270 / 7e-91 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 249 / 9e-83 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10040731 pacid=23157888 polypeptide=Lus10040731 locus=Lus10040731.g ID=Lus10040731.BGIv1.0 annot-version=v1.0 ATGGAGGTAGCAAGCAGCAGTTTCAAGAGCAAGTTAAGCAACAGGTGGTCTCTCCAAGGACAGACTGCACTTGTCACTGGTGGTTCCAAAGGAATTGGAT ATGCAGTGGTGGAAGAATTGGCAAGCCTAGGAGCCATTGTGCACACATGTTCCAGAAATCAGACAGACCTTGACAAGTGTTTGAATGACTGGAAGCACAA GGGTCTGGATCAGGTAACTGGTTCAGTCTGTGATATTTCCTCTGCAGCTGAAAGAGAGAAGCTAATGGAGACCATCTCGTCACAGTTCAACGGGAAGCTT AACATTTTGGTTAACAATGCAGGAACGTTCATAAACAAGGCCGCAGTGGAATTCACAGATGAAGATTACTCCTTCCTGATGAGTACAAATCTCGAATCTG CTTTTAATCTGAGTAAACTAGCTCATCCTCTTTTGAAAAATTCAGGGGAAGGAAGCGTCATCTTCATGTCTTCCGTCGCCGGCGTTTCTGCTGTGCAAAT TGGGTGCATATATGGGATGACCAAAGCTGCAATGGTTCAACTTACGAAGAATCTGGCTTGCGAGTGGGCTAAGGACAAGATAAGGGTCAACTGTGTTGCA CCCTGGTTCATCACAACTCCTCTCACTGAAGCCGTTTTGGAGGATGAGGAATTTAACAAGGCGGTGGTGGCTCAGACTCCGATGGGGCGAACTGGAAACC CGGAGGAGATAGCTGGAATGACGGCATTCCTAACAAGGCGGTGGTGGCTAGAACTCCGATGGGGCGAACGGGAAATCCAGAGGAGGTGGCTGGATTGA
AA sequence Show only first row Show all	>Lus10040731 pacid=23157888 polypeptide=Lus10040731 locus=Lus10040731.g ID=Lus10040731.BGIv1.0 annot-version=v1.0 MEVASSSFKSKLSNRWSLQGQTALVTGGSKGIGYAVVEELASLGAIVHTCSRNQTDLDKCLNDWKHKGLDQVTGSVCDISSAAEREKLMETISSQFNGKL NILVNNAGTFINKAAVEFTDEDYSFLMSTNLESAFNLSKLAHPLLKNSGEGSVIFMSSVAGVSAVQIGCIYGMTKAAMVQLTKNLACEWAKDKIRVNCVA PWFITTPLTEAVLEDEEFNKAVVAQTPMGRTGNPEEIAGMTAFLTRRWWLELRWGEREIQRRWLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040731 [exp]	0	1
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10031883 [exp]	1.4	0.8414
					Lus10003883 [exp]	2.4	0.8259
					Lus10039994 [exp]	2.8	0.8024
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016499 [exp]	7.9	0.8118
AT5G43700	AUX_IAA	IAA4, ATAUX2-11	indole-3-acetic acid inducible...		Lus10039488 [exp]	8.9	0.7294
AT3G25820		ATTPS-CIN	"terpene synthase-like sequenc...		Lus10006356 [exp]	15.8	0.7896
					Lus10032581 [exp]	19.6	0.7634
					Lus10008005 [exp]	22.7	0.7273
					Lus10025227 [exp]	26.6	0.7737
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10020018 [exp]	26.7	0.7882

Compare expression of checked genes

Lus10040731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.