Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06060 269 / 1e-90 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 260 / 3e-87 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 253 / 2e-84 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29340 251 / 1e-83 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29260 251 / 4e-83 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 248 / 2e-82 SAG13 senescence-associated gene 13 (.1.2.3) AT1G07450 246 / 5e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29360 242 / 3e-80 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29330 241 / 1e-79 TRI tropinone reductase (.1) AT2G29290 239 / 4e-79 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016498 [exp] 409 / 1e-145 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 379 / 3e-134 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 378 / 2e-133 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 376 / 7e-133 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016499 [exp] 340 / 1e-118 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040731 [exp] 298 / 3e-102 AT5G06060 308 / 5e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 281 / 2e-95 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 265 / 6e-89 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 254 / 9e-85 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142600 [exp] 270 / 3e-91 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.013G026000 [exp] 264 / 7e-89 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G059100 [exp] 263 / 2e-88 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 256 / 9e-85 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 252 / 4e-84 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 245 / 2e-81 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 242 / 4e-80 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 228 / 1e-74 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 218 / 7e-71 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 211 / 1e-68 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10040732 pacid=23157568 polypeptide=Lus10040732 locus=Lus10040732.g ID=Lus10040732.BGIv1.0 annot-version=v1.0 ATGGAGGCTGCAGAAAGTAGCAGTTTCAAGAGCAAACTGAGCAACAGATGGTCTCTCCATGGGAAGACTGCACTTGTCACTGGTGGAAGTAAAGGACTTG GGTATGCAATCGTTGAAGAATTGGCAGGACTAGGGGCTATTGTGCACACATGTTCCAGAAATCAGGCAGAAATTGACAAGTGTTTGAATGAATGGAACGA AAAGGGTCTTGAGGTAACTGGTTCTGTCTGTGATGTTTCCTCTGCAGTTGAAAGACAGAACCTAATCCAAACCTTGTCGTCTCAATTCAATGGAAAGCTA AACATTCTGATTAATAATGTAAGGACTAACATAAGAAGTCCAACACTGGAATACAGTGACGAAGATTACTCGTACCTGATGCGGACCAATCTCGAATCGG ACTATAGTGAGTTTGCTTGCTCACCCTCTGCTGAAAAGCTCAGGGGAAGGAAGCATAGTCTTCATGTCATCTGCTGCTGGTGTGATTTCTCTGCAATGGT TCAACTTACAAAAGATCTAGCCTGCAAGTGGGCAAAAGACAAGATAAGGATCAACTGTGTTGCACCCTGGTTCATCATAACTCCTATCACAGCGAAGGTT GAAAAGTTTTCAAAGGCAGTGATGGATCAAACTCCGATGGGAAGAACAGGGAAGCCGGAGGAGGCAGCTGGGTTGGTAGCATTCCTCTGCCTTCCAGCGT CATCTTACGTCACAGGCCAGACCGTTGCAGTTGACGGAGGAGCCACCGTTAACTGCTTCTCCCCTCCATGA
AA sequence Show only first row Show all	>Lus10040732 pacid=23157568 polypeptide=Lus10040732 locus=Lus10040732.g ID=Lus10040732.BGIv1.0 annot-version=v1.0 MEAAESSSFKSKLSNRWSLHGKTALVTGGSKGLGYAIVEELAGLGAIVHTCSRNQAEIDKCLNEWNEKGLEVTGSVCDVSSAVERQNLIQTLSSQFNGKL NILINNVRTNIRSPTLEYSDEDYSYLMRTNLESDYSEFACSPSAEKLRGRKHSLHVICCWCDFSAMVQLTKDLACKWAKDKIRINCVAPWFIITPITAKV EKFSKAVMDQTPMGRTGKPEEAAGLVAFLCLPASSYVTGQTVAVDGGATVNCFSPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040732 [exp]	0	1
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031114 [exp]	1.0	0.9127
					Lus10027003 [exp]	1.4	0.9011
AT1G68460		ATIPT1	Arabidopsis thaliana isopenten...		Lus10041440 [exp]	9.5	0.7993
					Lus10018952 [exp]	15.1	0.8300
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10000474 [exp]	17.7	0.8096
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Lus10013610 [exp]	17.9	0.8021
AT1G04610		YUC3	YUCCA 3 (.1)		Lus10023695 [exp]	27.5	0.8572
AT4G21520			Transducin/WD40 repeat-like su...		Lus10002602 [exp]	43.8	0.7738
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10021266 [exp]	68.9	0.8271
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Lus10032271 [exp]	69.6	0.7586

Compare expression of checked genes

Lus10040732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.