Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06060 337 / 3e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 323 / 1e-111 SAG13 senescence-associated gene 13 (.1.2.3) AT1G07440 320 / 2e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29150 319 / 3e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29340 312 / 1e-107 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29360 308 / 5e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29290 306 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29330 303 / 4e-104 TRI tropinone reductase (.1) AT1G07450 303 / 6e-104 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29310 296 / 2e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016497 [exp] 489 / 2e-177 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 481 / 4e-174 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 448 / 4e-161 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016499 [exp] 390 / 3e-138 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040732 [exp] 369 / 6e-130 AT5G06060 269 / 7e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040731 [exp] 358 / 1e-125 AT5G06060 308 / 5e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 343 / 2e-119 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 332 / 5e-115 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 322 / 2e-111 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142600 [exp] 330 / 9e-115 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.013G026000 [exp] 326 / 3e-113 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G059100 [exp] 322 / 3e-111 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 311 / 3e-107 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 311 / 4e-107 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 305 / 7e-105 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 307 / 2e-104 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 284 / 2e-96 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 276 / 3e-93 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 274 / 5e-93 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10040733 pacid=23157598 polypeptide=Lus10040733 locus=Lus10040733.g ID=Lus10040733.BGIv1.0 annot-version=v1.0 ATGGAGGCTGTAGTAGAAAGTAGCAGTTTCAAGAGCAAATTGAGTAGCAGATGGTCTCTCCATGGCAAGACTGCACTTGTCACTGGCGGCACTAAAGGAC TTGGGTATGCAATCGTTGAAGAATTGGCAGGACTAGGGGCTATTGTGCACACATGCTCCAGAAACCAGGAAGAAATTGGCAAGTGTTTGAATGAATGGAA GGAGAAGGGTCTTGAGGTAACTGGTTCTGTCTGTGATTTGACCTCTGCAGCAGAAAGAAAGAATCTAATGGAGACCGTGTCATGTCAGTTCAACGGAAAG CTAAACATCCTGATTAATAATGCAGGGACTAACATATATAAGCCGACACTGGAGTTCACTGACGAAGATTACTCGTACCTGATGCGAACCAATCTCGAAT CGGCCTATAGTCTGAGTCTGCTTGCTCACCCTCTGCTGAAAACCTCAGGGGAAGGCAACATAGTCTTCATGTCGTCTGCTGCTGGTGTGATTTCCATGAA TGTTGGATCCATATATGGGATGACCAAAGCTGCTATGGTTCAACTGACAAAGGACCTAGCCTGCGAGTGGGCAAAAGACAAAATAAGGATCAACTGTGTT GCACCCTGGTTCATCATAACTCCTATCAATGCAGAGTTATTCGAGAGTGAAAAGTTCACAAGTGCAGTGATAGCTCAAACCCCGATGGGACGAACGGGGA AGCCGGAGGAGGCAGCTGGGCTGGTGGCATTCCTCTGCCTTCCCGCTTCCTCTTATGTCACTGGCCAGACCGTAGCCGTCGACGGAGGAGCTACTGTGAA TTGCTTCTCCCCTCCATGA
AA sequence Show only first row Show all	>Lus10040733 pacid=23157598 polypeptide=Lus10040733 locus=Lus10040733.g ID=Lus10040733.BGIv1.0 annot-version=v1.0 MEAVVESSSFKSKLSSRWSLHGKTALVTGGTKGLGYAIVEELAGLGAIVHTCSRNQEEIGKCLNEWKEKGLEVTGSVCDLTSAAERKNLMETVSCQFNGK LNILINNAGTNIYKPTLEFTDEDYSYLMRTNLESAYSLSLLAHPLLKTSGEGNIVFMSSAAGVISMNVGSIYGMTKAAMVQLTKDLACEWAKDKIRINCV APWFIITPINAELFESEKFTSAVIAQTPMGRTGKPEEAAGLVAFLCLPASSYVTGQTVAVDGGATVNCFSPP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040733 [exp]	0	1
AT4G26010			Peroxidase superfamily protein...		Lus10005679 [exp]	2.8	0.8896
AT2G01900			DNAse I-like superfamily prote...		Lus10031310 [exp]	7.3	0.9096
AT5G06250	B3		AP2/B3-like transcriptional fa...		Lus10021326 [exp]	13.2	0.9069
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10021395 [exp]	16.9	0.8718
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10023109 [exp]	16.9	0.8795
					Lus10032744 [exp]	19.2	0.8175
AT3G24750			unknown protein		Lus10025939 [exp]	21.6	0.9007
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	22.7	0.9000
					Lus10038768 [exp]	23.9	0.8564
AT5G14920			Gibberellin-regulated family p...		Lus10032168 [exp]	24.0	0.8936

Compare expression of checked genes

Lus10040733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.