Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54220 624 / 0 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT5G41920 398 / 4e-133 GRAS GRAS family transcription factor (.1) AT1G66350 235 / 4e-69 GRAS RGL1 RGA-like 1 (.1) AT3G03450 233 / 5e-68 GRAS RGL2 RGA-like 2 (.1) AT1G14920 219 / 6e-63 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 217 / 2e-62 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT2G01570 212 / 6e-60 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT2G04890 200 / 2e-57 GRAS SCL21 SCARECROW-like 21 (.1) AT5G66770 199 / 2e-55 GRAS GRAS family transcription factor (.1) AT1G63100 200 / 3e-55 GRAS GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016496 [exp] 1059 / 0 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10003540 [exp] 382 / 5e-125 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10033912 [exp] 378 / 3e-123 AT3G54220 414 / 6e-138 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10012554 [exp] 315 / 2e-96 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10041540 [exp] 313 / 2e-96 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10010462 [exp] 244 / 3e-73 AT5G41920 327 / 2e-108 GRAS family transcription factor (.1) Lus10033583 [exp] 241 / 2e-70 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017626 [exp] 238 / 2e-69 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10029592 [exp] 222 / 1e-62 AT1G63100 669 / 0.0 GRAS family transcription factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G143833 [exp] 605 / 0 AT3G54220 679 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.006G114200 [exp] 594 / 0 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.006G021400 [exp] 397 / 6e-132 AT5G41920 509 / 2e-180 GRAS family transcription factor (.1) Potri.016G018900 [exp] 395 / 1e-131 AT5G41920 506 / 5e-179 GRAS family transcription factor (.1) Potri.002G036100 [exp] 387 / 2e-127 AT3G54220 441 / 9e-149 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.005G226800 [exp] 374 / 4e-122 AT3G54220 424 / 3e-142 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.001G326000 [exp] 320 / 1e-99 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.010G110700 [exp] 244 / 9e-72 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.017G125200 [exp] 238 / 4e-69 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 233 / 1e-67 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10040734 pacid=23157781 polypeptide=Lus10040734 locus=Lus10040734.g ID=Lus10040734.BGIv1.0 annot-version=v1.0 ATGGCGGAGACTCCGAACGAGAGCAGTAGCGGTGCAGGCAACGGAGTGGTGCTGGTTAGAAGGAAAATGGAGAAGAAGAGGATTGCATCTGAAATGTTGC AACCAACGGCTACAGCCAACGACCAGAATCAAAACCAACGGCGGCCATACTACCGGAGGACAGCCATTAGTAACAGTACTGTTGTTCTTCCCGGCGTTGA CCAACAACAAGACATGAACTTGGAGGAATTGGTCAACTACTCCACTACTACTACTATTAGTAGTGCAACAATGTTGTCATCATCACCTTCTTCTTCAGTC AACGTGTTGACCGCTCCACCCAATGGCAATGATAGTAATAATAGTAATCTTGTGTGTGGGTTTTCTGGTCTTCCACTGTTCCCTCCCTATCAAAAGAAGA CTAGTGGTAGTAGAGAAAGAGAAGATCACATTCCACCACAAGCTAATCAGACTGTCGCTGTTGCTTCAGCCTCAGCGTCCTCCTCGTCTCCGGTGATCAT CACTAGTCAGATGGCCGAGGAGGAGGCAGAGGCTAGTGGTTCATCGTCATCGAGCTGGATTAACGGAATACTAAGGGACCTCATCAATAGCGCATCATCA GCTTCTTCAGCTTCCACCGTCTCCATCCCACAGCTGATTCAGAACGTGAGAGATATCATATACCCTTGCAACCCTAATCTAGCCTCTTTGCTCGAACACA AGCTCCGTTCCCTCGTCAACCCTACGACTAATACCATCTCTAAGGTCCAAATCTCTCCTAATATTCTTCCTTTACCTTACTCCGGATCTCCTGCTTCTGC TTCTGAGGAGGAGAGAATTATTAGGTGTTCATCTGATACAACCGCGGCACAAGCACAAGCACAAGTTGAGAAGCAGAATGAAGATGGGGTTGAGAAGAAG AGAGATGAAGATGGGCTGCACCTGCTGACGTTGCTCCTACAGTGCGCAGAGGCGGTGTCTGCTAACAATCTGGGGGAGGCTAACAAGATGCTGCTTGAGA TATCTGAGCTCTCCACCCCATTTGGAACCTCTGCACAGAGGGTAGCCGCCTACTTCTCTGAAGCTATGTCAGCTAGAGTACTAACATCCTGCCTTGGACT AGCACCCCAAAACTCCAACATCCTCCAAAACAACAACTACTACTCCACCAGGATTGCCTCTGCTTTCCAGGTGTTCAATGGGATTAGCCCATTCGTTAAG TTCTCGCACTTCACGGCAAATCAGGCCATACAGGAAGCTTTCGAGAGAGAGGATCGAGTACACATCATAGATCTGGATATAATGCAGGGTTTACAGTGGC CTGGACTGTTCCACATTCTAGCTTCCCGACCAGGCGGCCCACCTTACGTCCGCCTCACCGGCCTCGGCTCCTCCTTACATTCCCTCCAGTCTACCGGGAA GAGGCTGTCTGACTTCGCGCACAAGTTAGGTCTACCATTCGAGTTCATCCCTGTAGCCGACAAGGTCGGCAACCTAAACTGGGAGCGGCTCAACGTGACT AACAAAATGGAAGCCGTAGCAGTACACTGGCTACAACACTCATTATACGACGTCACGGGCTCCCACGCCAACACACTATCTATACTAAAGCGGCTAGCTC CGAAAGTGGTGACAGTAGTGGAGCAAGACCTAAGCCACGATACGGGGTCGTTTCTGGGTCGGTTTGTGGAAGCGATCCACTATTACTCTGCGCTGTTCGA CTCCCTCGGCGCTAGCTATGGCGAGGAGAGCGAGGAGAGACACGTCGTGGAGCAGCAGCTACTGTCCCGAGAAATACGTAACGTTTTGGCTACTAGTACT AGTACCGGTATCAGTACCGGTACCGGTACTAGTAGTTGGAGGGGGAAGTTGGAGAAGTCGGGGTTTAAGGGAGTGTCGCTTGCCGGGAATGCGGCAACGC AAGCTACGCTACTGCTGGGGATGTTCCCGTGTGATGGTTACACGTTGGTTGAGGATAAAGGAACTCTTAAGCTTGGTTGGAAAGATCTCTGTTTGCTCAC TGCTTCGGCGTGGAAACCTCCGACTACGACGATGACCGAAGTCGACGCTCCGCCTGGTTCGACCGGCCTCCAACAGTACCATCCTCATCCATTAATGCCG ACAACATCCTAG
AA sequence Show only first row Show all	>Lus10040734 pacid=23157781 polypeptide=Lus10040734 locus=Lus10040734.g ID=Lus10040734.BGIv1.0 annot-version=v1.0 MAETPNESSSGAGNGVVLVRRKMEKKRIASEMLQPTATANDQNQNQRRPYYRRTAISNSTVVLPGVDQQQDMNLEELVNYSTTTTISSATMLSSSPSSSV NVLTAPPNGNDSNNSNLVCGFSGLPLFPPYQKKTSGSREREDHIPPQANQTVAVASASASSSSPVIITSQMAEEEAEASGSSSSSWINGILRDLINSASS ASSASTVSIPQLIQNVRDIIYPCNPNLASLLEHKLRSLVNPTTNTISKVQISPNILPLPYSGSPASASEEERIIRCSSDTTAAQAQAQVEKQNEDGVEKK RDEDGLHLLTLLLQCAEAVSANNLGEANKMLLEISELSTPFGTSAQRVAAYFSEAMSARVLTSCLGLAPQNSNILQNNNYYSTRIASAFQVFNGISPFVK FSHFTANQAIQEAFEREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGSSLHSLQSTGKRLSDFAHKLGLPFEFIPVADKVGNLNWERLNVT NKMEAVAVHWLQHSLYDVTGSHANTLSILKRLAPKVVTVVEQDLSHDTGSFLGRFVEAIHYYSALFDSLGASYGEESEERHVVEQQLLSREIRNVLATST STGISTGTGTSSWRGKLEKSGFKGVSLAGNAATQATLLLGMFPCDGYTLVEDKGTLKLGWKDLCLLTASAWKPPTTTMTEVDAPPGSTGLQQYHPHPLMP TTS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G41920	GRAS		GRAS family transcription fact...		Lus10040734 [exp]	0	1
AT3G54220	GRAS	SGR1, SCR	SHOOT GRAVITROPISM 1, SCARECRO...		Lus10016496 [exp]	2.6	0.8332
AT4G36710	GRAS	AtHAM4	Arabidopsis thaliana HAIRY MER...		Lus10041721 [exp]	24.2	0.7469
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10015631 [exp]	27.9	0.7130
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10001347 [exp]	50.3	0.7029
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10033563 [exp]	62.2	0.6860
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Lus10003992 [exp]	64.3	0.7004
AT2G03430			Ankyrin repeat family protein ...		Lus10010667 [exp]	73.3	0.6476
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10033665 [exp]	74.1	0.6210
AT5G37600		ATGLN1;1, GLN1;...	ARABIDOPSIS THALIANA GLUTAMINE...		Lus10020812 [exp]	78.8	0.6336
AT1G28600			GDSL-like Lipase/Acylhydrolase...		Lus10015476 [exp]	82.0	0.5938

Compare expression of checked genes

Lus10040734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.