Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06060 342 / 3e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 336 / 5e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 328 / 1e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29350 327 / 3e-113 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29340 323 / 4e-112 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29360 318 / 8e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29310 318 / 9e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29290 315 / 1e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G07450 314 / 2e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29330 306 / 3e-105 TRI tropinone reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016498 [exp] 471 / 4e-170 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 459 / 3e-165 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 457 / 1e-164 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016499 [exp] 412 / 9e-147 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040731 [exp] 387 / 7e-137 AT5G06060 308 / 5e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040732 [exp] 376 / 9e-133 AT5G06060 269 / 7e-91 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 346 / 1e-120 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 334 / 6e-116 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 322 / 2e-111 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142600 [exp] 347 / 3e-121 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.013G026000 [exp] 333 / 4e-116 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.008G059100 [exp] 323 / 5e-112 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 318 / 8e-110 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 314 / 3e-108 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 313 / 4e-108 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 305 / 2e-103 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 295 / 2e-100 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 282 / 1e-95 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 278 / 2e-94 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10040735 pacid=23157872 polypeptide=Lus10040735 locus=Lus10040735.g ID=Lus10040735.BGIv1.0 annot-version=v1.0 ATGGAGGGTTCAGAAAGTAACAGTTTCAGGAGCAAGTTGATCAGCAGCAGATGGTCTCTCCATGGAAAGACTGCACTTGTCACCGGCGGCACTAAAGGAC TTGGATATGCAATCGTAGAAGAATTGGCAAGCTTAGGAGCTATTGTGCACATATGCTCCAGAAACCAGGCAGATATTAACAAGTGTCTGAACGACTGGAA GGAAAAGGGTCTTGAGGTAACTGGTTCAGTCTGCGACGTGACCTCTGCAGCTGATAGAGAGAAGCTAATCCAAACCCTGTCATCACAATTTAACGGAAAG CTAAACATCCTGATTAACAATGCGGGGGCATACATATATAAGCCAACGCTGGAATTCACTGATGAAGATTACTCGTACCTGATGCGTACCAATCTCGAAT CGGCCTACAATCTCAGCCGACTTGCTCACCCGCTGCTGAAGAATTCAGGGGAAGGAAGCATAGTCTTCATGTCATCTGCTGCTGGCGTCACTGCTTTGAA TGTCGGAACCATATATGCCATGTCCAAAGCTGCAATGGTTCAACTGACAAAGGATCTTGCGTGTGAGTGGGCAAAGGACATGATAAGGATCAACTGCGTT GCGCCTTGGTTCATCAGAACTCCTCTCAATGCAGTCTTGTTCGAGGATGAGAAATTTGCAAAGGCAGTGATGGATCAAACTCCGATGGGACGAACGGGGA AGACAGAGGAGGCAGCCGGGTTGGTTGCATTTTTCTGCCTTCCTGCTGCCTCTTACGTTACAGGACAGACGGTTGCTGTTGACGGAGGAGCCACTATCAA TTGCTTCTCCGCTCCATAA
AA sequence Show only first row Show all	>Lus10040735 pacid=23157872 polypeptide=Lus10040735 locus=Lus10040735.g ID=Lus10040735.BGIv1.0 annot-version=v1.0 MEGSESNSFRSKLISSRWSLHGKTALVTGGTKGLGYAIVEELASLGAIVHICSRNQADINKCLNDWKEKGLEVTGSVCDVTSAADREKLIQTLSSQFNGK LNILINNAGAYIYKPTLEFTDEDYSYLMRTNLESAYNLSRLAHPLLKNSGEGSIVFMSSAAGVTALNVGTIYAMSKAAMVQLTKDLACEWAKDMIRINCV APWFIRTPLNAVLFEDEKFAKAVMDQTPMGRTGKTEEAAGLVAFFCLPAASYVTGQTVAVDGGATINCFSAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040735 [exp]	0	1
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10027846 [exp]	2.0	0.9388
AT3G25855			Copper transport protein famil...		Lus10021687 [exp]	2.8	0.9314
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10040065 [exp]	6.3	0.8939
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10033405 [exp]	6.8	0.9380
AT1G65230			Uncharacterized conserved prot...		Lus10027002 [exp]	7.4	0.9177
					Lus10038232 [exp]	8.7	0.9340
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10024300 [exp]	9.5	0.8849
AT3G15420			Transcription factor TFIIIC, t...		Lus10023017 [exp]	10.4	0.8398
AT1G31335			unknown protein		Lus10040642 [exp]	13.0	0.9165
AT5G42750		BKI1	BRI1 kinase inhibitor 1 (.1)		Lus10021736 [exp]	13.3	0.8929

Compare expression of checked genes

Lus10040735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.