Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G06060 350 / 2e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29350 348 / 1e-121 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29290 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29360 345 / 2e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29150 330 / 7e-115 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 325 / 6e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29260 325 / 9e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29370 321 / 5e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29340 318 / 5e-110 NAD-dependent epimerase/dehydratase family protein (.1.2.3) AT2G29330 317 / 8e-110 TRI tropinone reductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040271 [exp] 339 / 3e-118 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 336 / 6e-117 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 331 / 6e-115 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040737 [exp] 322 / 2e-111 AT2G29350 332 / 3e-115 senescence-associated gene 13 (.1.2.3) Lus10016497 [exp] 321 / 6e-111 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 321 / 8e-111 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016499 [exp] 315 / 9e-109 AT5G06060 337 / 2e-117 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 315 / 1e-108 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040730 [exp] 313 / 8e-107 AT2G29260 405 / 2e-142 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059100 [exp] 341 / 6e-119 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G142600 [exp] 336 / 4e-117 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.013G026000 [exp] 335 / 2e-116 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.001G245000 [exp] 334 / 3e-116 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 328 / 6e-114 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 323 / 4e-112 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 316 / 4e-108 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089800 [exp] 310 / 1e-106 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 290 / 8e-99 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 260 / 2e-87 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10040736 pacid=23157740 polypeptide=Lus10040736 locus=Lus10040736.g ID=Lus10040736.BGIv1.0 annot-version=v1.0 ATGGCTGGGGGGAGCATCAGCGCTGGAGATTCCAGGTGGTCGCTTCGAGGAAGGACTGCACTCGTTACCGGTGGAACCAAAGGAATTGGATACGCTATCG TGGAAGAATTGGCTGGACTCGGAGCAGCCGTGCACACTTGTTCGAGGGACGGAGCTCGTCTTCAAGAGTGCTTACACGAATGGAAATCGAAAGGTTTCCA AGTTACTGTTTCAGTCTGTGATGTATCATCCCGAGCAGAAAGGGAAAACCTCGTAAAGGAAGTTTCATCACTCTTCAATGAAAAATTAAACATTCTCGTC AACAACGTAGGAACCAACGTGACTAAGCCAACCGTCGATTACACAGCCGAGGATTACTCATCTCTTATGGGCACAAATTTCGATTCTGGTTTCAACTTCT GCCAATTAACCCACCCGCTCCTTAAAGCTTCAGGGGATGGAAGCATTGTGTTCATTTCCTCTGTTGGTGGGGTTGTTTCGTTAAGCACTGGAACCATATA CGGTGCAACCAAAGGAGCCATGAATCAGCTGACCAGGAACTTGGCATGTGAGTGGGCGAAGGATAACATAAGGACCAACTGTGTTGCTCCTTGGTATATC AAAACTCCACTGGCAGAACGGAATCTCAGCAGGGAGGATTTTATGAAAGAGGTAGTCAGCAGAACGCCGATGGGGAGAGTTGGAGAACCAAAAGAGGTGT CTTCTCTAGTTGCGTTTCTGTGCCTTCCATCTGCTTCTTACATAACTGGACAAACCATCTGCGTCGATGGAGGGATGACGGTTAATGGTTTCTCCTTCCC ATAA
AA sequence Show only first row Show all	>Lus10040736 pacid=23157740 polypeptide=Lus10040736 locus=Lus10040736.g ID=Lus10040736.BGIv1.0 annot-version=v1.0 MAGGSISAGDSRWSLRGRTALVTGGTKGIGYAIVEELAGLGAAVHTCSRDGARLQECLHEWKSKGFQVTVSVCDVSSRAERENLVKEVSSLFNEKLNILV NNVGTNVTKPTVDYTAEDYSSLMGTNFDSGFNFCQLTHPLLKASGDGSIVFISSVGGVVSLSTGTIYGATKGAMNQLTRNLACEWAKDNIRTNCVAPWYI KTPLAERNLSREDFMKEVVSRTPMGRVGEPKEVSSLVAFLCLPSASYITGQTICVDGGMTVNGFSFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040736 [exp]	0	1
AT1G49975			unknown protein		Lus10033771 [exp]	1.0	0.9608
AT1G72690			unknown protein		Lus10008389 [exp]	2.4	0.9130
AT2G30695			unknown protein		Lus10008363 [exp]	2.8	0.9356
AT1G29510		SAUR68	SMALL AUXIN UPREGULATED 68, SA...		Lus10020439 [exp]	4.7	0.9030
AT4G30845			unknown protein		Lus10002320 [exp]	6.7	0.8984
AT4G39710		PnsL4, FKBP16-2	Photosynthetic NDH subcomplex...		Lus10000197 [exp]	7.1	0.9226
AT1G21350			Thioredoxin superfamily protei...		Lus10018916 [exp]	9.8	0.8503
AT5G20220			zinc knuckle (CCHC-type) famil...		Lus10036722 [exp]	13.0	0.8922
AT5G19440			NAD(P)-binding Rossmann-fold s...		Lus10026152 [exp]	13.4	0.9015
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10003521 [exp]	15.1	0.8692

Compare expression of checked genes

Lus10040736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.