Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29350 331 / 3e-115 SAG13 senescence-associated gene 13 (.1.2.3) AT2G29290 327 / 1e-113 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G29150 325 / 1e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29360 324 / 3e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 322 / 2e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29260 317 / 7e-109 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29370 313 / 6e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G07440 311 / 4e-107 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G07450 308 / 5e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G29340 304 / 1e-104 NAD-dependent epimerase/dehydratase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016494 [exp] 414 / 1e-147 AT5G06060 333 / 7e-116 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001560 [exp] 374 / 3e-130 AT5G06060 350 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040736 [exp] 350 / 2e-122 AT5G06060 382 / 3e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040271 [exp] 320 / 1e-110 AT5G06060 388 / 2e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004704 [exp] 316 / 5e-109 AT5G06060 387 / 3e-137 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10010873 [exp] 308 / 5e-106 AT5G06060 308 / 2e-106 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10004984 [exp] 306 / 4e-105 AT5G06060 343 / 6e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040735 [exp] 304 / 3e-104 AT5G06060 341 / 4e-119 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 301 / 2e-103 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G059100 [exp] 337 / 1e-117 AT5G06060 416 / 8e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G245000 [exp] 332 / 1e-115 AT2G29150 343 / 9e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 328 / 5e-114 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.010G142600 [exp] 320 / 9e-111 AT2G29290 354 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G089800 [exp] 318 / 5e-110 AT2G29150 307 / 2e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039300 [exp] 311 / 2e-107 AT2G29150 356 / 7e-125 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G039500 [exp] 311 / 2e-107 AT2G29150 351 / 5e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G089700 [exp] 305 / 7e-105 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G244900 [exp] 302 / 1e-102 AT2G29260 387 / 4e-135 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 262 / 2e-88 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10040737 pacid=23157815 polypeptide=Lus10040737 locus=Lus10040737.g ID=Lus10040737.BGIv1.0 annot-version=v1.0 ATGGCCGAATCAGCAAGCAGGTGGTCACTCCACGGAATGACAGCTCTGGTCACCGGCGGCACCAAAGGAATCGGATATGCTATAGTGGAAGAACTGGCAA AGCTTGGCGCAACTGTGCACACTTGCTCCCGGACTGAAGAGGAGCTGAATCAACGCATAATTGAATGGGGAGAAAAGGGGTTTAAAATCACTGGATCCGT TTGCGACGTGTCTTCTCGAGTTGATCGTGAGAAGCTTGTCGAGACTGTTTCTTCTCTCTTCGCCGGCAAACTTAACATTCTTGTGAACAATGCAGGAACA TCAATTGGGAGACTAACCACTAAAGTTACAGCAGAAGAGCTCTCAACTCTATGGGGAACAAACTTCGAATCCGGTTACAACTTGTGCCAGCTCACACACC CTCTCCTTAAAGCTTCTGGCTCAGCAAGCATAGTTTTCATATCTTCAGTCGCAGGCGCAGCATCTTTCGCTTACCTCACAGCTTACGGAGCCACCAAGGG AGCAATCAATCAACTTGCGAGAAGCCTGGCATGCGAGTGGGCCAAAGACAACATAAGGACCAACTCCGTTGCGCCTGCATATACCAGAACTCCGTTTGTC GAGCAGGATCTTAAAAACGAACAACTTGTGAAGCCTTATCTTAAGCATACACCTTTGGGGCGGATAGCTGAGGCAGAGGATGTGTCGGCAGTAGTGGCGT TCTTGTGCATGCCTGCTGCATGTTATGTTACAGGGCAGACCATATCTGTAGACGGGGGATTTACTGTTAATGGTTTCTCATTGAGATAG
AA sequence Show only first row Show all	>Lus10040737 pacid=23157815 polypeptide=Lus10040737 locus=Lus10040737.g ID=Lus10040737.BGIv1.0 annot-version=v1.0 MAESASRWSLHGMTALVTGGTKGIGYAIVEELAKLGATVHTCSRTEEELNQRIIEWGEKGFKITGSVCDVSSRVDREKLVETVSSLFAGKLNILVNNAGT SIGRLTTKVTAEELSTLWGTNFESGYNLCQLTHPLLKASGSASIVFISSVAGAASFAYLTAYGATKGAINQLARSLACEWAKDNIRTNSVAPAYTRTPFV EQDLKNEQLVKPYLKHTPLGRIAEAEDVSAVVAFLCMPAACYVTGQTISVDGGFTVNGFSLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10040737 [exp]	0	1
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10033594 [exp]	1.0	0.8608
AT5G07610			F-box family protein (.1)		Lus10024021 [exp]	3.0	0.8366
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10003295 [exp]	3.2	0.8593
AT1G18680			HNH endonuclease domain-contai...		Lus10015728 [exp]	8.1	0.8020
AT1G52870			Peroxisomal membrane 22 kDa (M...		Lus10032655 [exp]	9.6	0.7722
					Lus10007298 [exp]	12.0	0.8347
AT5G01750			Protein of unknown function (D...		Lus10009094 [exp]	12.1	0.7859
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Lus10030035 [exp]	13.7	0.7791
AT4G19390			Uncharacterised protein family...		Lus10032866 [exp]	14.7	0.7498
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10030320 [exp]	15.7	0.8308

Compare expression of checked genes

Lus10040737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.