Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46640 171 / 3e-52 GARP PCL1, LUX PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) AT5G59570 158 / 1e-47 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1) AT5G05090 132 / 7e-38 GARP Homeodomain-like superfamily protein (.1) AT2G40970 128 / 1e-36 GARP MYBC1 Homeodomain-like superfamily protein (.1) AT3G10760 130 / 2e-36 GARP Homeodomain-like superfamily protein (.1) AT4G16110 97 / 2e-23 GARP ARR2 response regulator 2 (.1) AT3G16857 96 / 4e-23 GARP ARR1 response regulator 1 (.1.2) AT2G01760 92 / 8e-22 GARP ARR14 response regulator 14 (.1) AT2G25180 92 / 1e-21 GARP ARR12 response regulator 12 (.1) AT5G58080 89 / 1e-20 GARP ARR18 response regulator 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012102 [exp] 139 / 3e-40 AT3G10760 274 / 3e-91 Homeodomain-like superfamily protein (.1) Lus10010442 [exp] 136 / 4e-39 AT3G10760 271 / 5e-90 Homeodomain-like superfamily protein (.1) Lus10038996 [exp] 131 / 5e-37 AT3G10760 275 / 5e-91 Homeodomain-like superfamily protein (.1) Lus10027291 [exp] 128 / 1e-35 AT5G05090 266 / 2e-87 Homeodomain-like superfamily protein (.1) Lus10019058 [exp] 98 / 1e-23 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10041020 [exp] 97 / 3e-23 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10005340 [exp] 96 / 5e-23 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10037719 [exp] 96 / 9e-23 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10016846 [exp] 96 / 1e-22 AT3G16857 603 / 0.0 response regulator 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G035000 [exp] 216 / 1e-69 AT3G46640 250 / 3e-81 PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) Potri.001G243600 [exp] 205 / 5e-65 AT3G46640 233 / 8e-74 PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3) Potri.006G034900 [exp] 127 / 2e-35 AT3G10760 271 / 8e-90 Homeodomain-like superfamily protein (.1) Potri.016G032600 [exp] 125 / 6e-35 AT3G10760 278 / 3e-92 Homeodomain-like superfamily protein (.1) Potri.008G135500 [exp] 100 / 1e-24 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 100 / 1e-24 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.008G213500 [exp] 97 / 3e-23 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.010G001000 [exp] 94 / 2e-22 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.006G262100 [exp] 91 / 4e-21 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G111300 [exp] 90 / 6e-21 AT2G25180 348 / 3e-111 response regulator 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040780 pacid=23157628 polypeptide=Lus10040780 locus=Lus10040780.g ID=Lus10040780.BGIv1.0 annot-version=v1.0 ATGAGGAAGCTCGATTCCGAGGAGGCGGATTCGGTTCTCAGACCCGAGAATTCGACCGACGATCCGTCCGGGAAGGCGCTGAAACGGGCTCGTTTGGTGT GGACTCCGCAATTGCACAAGCGATTCGTCGATGTGGTGGCTTACTTAGGGGTTAAGAACGCGGTTCCAAAAACTATTATGCAGCTGATGAACGTCGAAGG GCTGACGAGGGAGAACGTCGCTAGTCACTTGCAGAAGTACCGACTTTACCTCAAGAGGATGCAGGGGCTTTCCACAGACGGCCCGTCTTCCTCCGATCAG CTCTTTGCATCGACTCCGCCGCCGCCAAGTTTGCAAGAGAGCGGCGGAGTTGGTGGTGGAGGAGGTGGAGGAGGAGGAGGGGGAGTTCCCATGCCGTCGC CGTATCAGCAGGTGGCGGCGGATGCGATGATGCCAGGGTCGATGTATGGGCATATGGGCATACAACAGATGGGGAGTAACCATCACTACCACCATTACCA TCATCACCACGGGTTTGATCGGAATGCTCAGTACAATAATTATGGGTCGGTCGTGTCTTTTCCTCAGCATCATCACCCGCATCAGGTTGCTCCTAATGAT AACATGTGA
AA sequence Show only first row Show all	>Lus10040780 pacid=23157628 polypeptide=Lus10040780 locus=Lus10040780.g ID=Lus10040780.BGIv1.0 annot-version=v1.0 MRKLDSEEADSVLRPENSTDDPSGKALKRARLVWTPQLHKRFVDVVAYLGVKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSTDGPSSSDQ LFASTPPPPSLQESGGVGGGGGGGGGGGVPMPSPYQQVAADAMMPGSMYGHMGIQQMGSNHHYHHYHHHHGFDRNAQYNNYGSVVSFPQHHHPHQVAPND NM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46640	GARP	PCL1, LUX	PHYTOCLOCK 1, LUX ARRHYTHMO, H...		Lus10040780 [exp]	0	1
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10019077 [exp]	1.4	0.9047
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10015720 [exp]	3.5	0.8607
					Lus10014061 [exp]	3.5	0.8426
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Lus10031247 [exp]	4.2	0.8488
AT3G20810		JMJ30, JMJD5	2-oxoglutarate (2OG) and Fe(II...		Lus10031818 [exp]	5.0	0.8302
AT4G37300		MEE59	maternal effect embryo arrest ...		Lus10018201 [exp]	8.1	0.7787
AT2G29950		ELF4-L1	ELF4-like 1 (.1)		Lus10040667 [exp]	9.9	0.7103
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10019759 [exp]	10.2	0.6526
					Lus10027443 [exp]	11.3	0.7610
					Lus10005752 [exp]	12.6	0.7367

Compare expression of checked genes

Lus10040780 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.