Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07510 984 / 0 FTSH10 FTSH protease 10 (.1) AT2G29080 963 / 0 FTSH3 FTSH protease 3 (.1) AT2G29090 464 / 8e-152 CYP707A2 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) AT4G19230 421 / 1e-135 CYP707A1 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) AT5G45340 414 / 3e-133 CYP707A3 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) AT3G19270 389 / 2e-123 CYP707A4 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) AT1G50250 386 / 4e-119 FTSH1 FTSH protease 1 (.1) AT5G42270 378 / 2e-116 FTSH5, VAR1 VARIEGATED 1, FtsH extracellular protease family (.1) AT5G15250 372 / 3e-114 FTSH6, ATFTSH6 FTSH protease 6 (.1.2) AT2G30950 363 / 4e-111 FTSH2, VAR2 VARIEGATED 2, FtsH extracellular protease family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016516 [exp] 1186 / 0 AT1G07510 1111 / 0.0 FTSH protease 10 (.1) Lus10001573 [exp] 1100 / 0 AT1G07510 1194 / 0.0 FTSH protease 10 (.1) Lus10004973 [exp] 770 / 0 AT1G07510 815 / 0.0 FTSH protease 10 (.1) Lus10016515 [exp] 717 / 0 AT2G29090 554 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Lus10004972 [exp] 533 / 2e-180 AT1G07510 580 / 0.0 FTSH protease 10 (.1) Lus10033308 [exp] 417 / 7e-134 AT5G45340 732 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10034768 [exp] 415 / 3e-133 AT5G45340 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 3", cytochrome P450, family 707, subfamily A, polypeptide 3 (.1.2) Lus10035685 [exp] 400 / 2e-127 AT4G19230 714 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Lus10012277 [exp] 385 / 6e-122 AT1G50250 935 / 0.0 FTSH protease 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G033600 [exp] 1016 / 0 AT1G07510 1114 / 0.0 FTSH protease 10 (.1) Potri.016G099800 [exp] 1006 / 0 AT2G29080 1123 / 0.0 FTSH protease 3 (.1) Potri.009G033900 [exp] 481 / 4e-158 AT2G29090 677 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.001G242600 [exp] 477 / 1e-156 AT2G29090 652 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 2", cytochrome P450, family 707, subfamily A, polypeptide 2 (.1.2) Potri.004G235400 [exp] 404 / 5e-129 AT4G19230 778 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 1", cytochrome P450, family 707, subfamily A, polypeptide 1 (.1.2) Potri.004G140900 [exp] 396 / 4e-126 AT3G19270 731 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.009G101700 [exp] 385 / 5e-122 AT3G19270 711 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.002G126100 [exp] 381 / 1e-120 AT3G19270 666 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.014G029100 [exp] 380 / 3e-120 AT3G19270 665 / 0.0 "cytochrome P450, family 707, subfamily A, polypeptide 4", cytochrome P450, family 707, subfamily A, polypeptide 4 (.1) Potri.002G012000 [exp] 388 / 5e-120 AT5G42270 1094 / 0.0 VARIEGATED 1, FtsH extracellular protease family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06480 [flax] [poplar] FtsH_ext FtsH Extracellular CL0126 [flax] [poplar] Peptidase_MA PF01434 [flax] [poplar] Peptidase_M41 Peptidase family M41 CL0126 [flax] [poplar] PF00067 [flax] [poplar] p450 Cytochrome P450 CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10040785 pacid=23157738 polypeptide=Lus10040785 locus=Lus10040785.g ID=Lus10040785.BGIv1.0 annot-version=v1.0 ATGCTCAACATTACACCGCCGGCGCCGGAGCTTCTCCCCCTAATAATCACTATCCTCCCCTTCCTTCTCCTCCTCCTCCTCCTCCTATGTTTCTTCCTCC GAAATCGCCACCGTCATCATCGCTCCTCCCTCCCACCGGGGTCAATGGGGTGGCCCCACTTCGGGGAGACCAAACTCCTCTACGGCGGCGATGACCCCAA CTCGTTCTTCTTCTCCCGCCCCAAAAAATACGGCGAAGAAATCAAAAACCACATACTAGGGCGCCCCCGCCACCAGGGCGATTACCACTCCCGGCTCAAG CGCATCGTCCATTCCACTCTCTTGCCTTCTTCCATTCGTCGCTCCATCGGAGATATCGAATCCCTCGCTCTCAACTTGCTCTCTTCCTGGGACACCACTG CTTCTTCCCTCAACACTTTGGATCAAATGAAACGGTTTGCATTTGACGTGGCAATAATGTCGGTGTTCGGGGAGAGGCTGGAGAGGAATGAAGAGGAAGA TATCAGACGGCTCGACGCCATGTTGGAGAAAGGCTATAATTCTATGCCACTCAATTTTCCGTTGACCAAGTATCACAACGCTGTCAAGGCGAGGGACACG TTGGACAAGAAGCTGAAGGCGATGATGGAGAAGAGGATAAGGGAGAGTGGGGCCCGCAAAGGCGGCTACGGCGGAGGGTTGTTGGGAGCTATGCTGAGCA ATGGTAGTTCGGGGGATGACAGCGGCGGCGGGTTTAGTGAAGCCCAAATTGCCGACAACATCATCGGACTCATCTTCGCGGCGAACGACACCACCGCCAG CGTGCTCACTTGGCTTCTCAAGTACTTGTATGAGAATCCCAATGAGTTACAAGCCGTCACGGAGGAGCAGGACAGTATTAAAGCGGAAATAAAGGCTGCA AAACGGCAGCTTACGTGGGAGGATACTAAGCGTATGCCGTTGACCAACCGGGTGATTCAAGAGACACTAAGAGCTGCAAGCGTACTCTTGTTCTTGTTTA GAGAGGCAGTGAAAGATGTTGAGTTTGGAGGGTACATTATCCCCAAAGGTTGGAAGGTTCTTCCTGTTTTTCGTACCCTCCATCACTCCGCCGATTTCTT CCCTCATCCCGAGCGATTCGACCCTTCTCGCTTCCAGGTCCCACCGAGGCCGAATACATACTTGCCATTCGGAACAGGACTCCACTCATGTCCAGGGAGC GATCTTGCCAGGCTCGAGATGCTGGTTTTCCTTCACCACCTTACAACCACTTACAAGTGGGAAGTTGTGGGAGAAGTTAGCCGCGGGGTGCAGTACGGAC CTTTCCCTGTGCCCAAAGGAGGTTTACCCATTAGATGGCAGAATGTGTTGCGCGGTGCTTACCGGAAATCGGCCCTCGCAAGCGGCACGCCGGGAGGTTT CTATGTCAATCGATTGGACGAGGGAGTGAGTTTTGTGAGAAGTTATTTGACTTCTATTGGAGCTACCAAGCCCTCTGCTGCAAAAACTTCCTTTTCCAAT CTCAACTCCTTTCTAGCGAACCCCAGAGTTCGACGGTTCTTCTCCAGTGAGGCTCCCAAGAAGAAGAATTATGAGAACTTTTATCCTAAGGGAAAGAAGA AAGCTCCGAAAGGAGATGGGAAGAAATCTGAGTTCAAAGAGAGTTTGAATGCCGATGGCGACACAGGCTCTAAGAAGCGACTAAAGATCGACTATCTTAC CAATTTCTTAATTGGCGCGCTGATTGTAATGGCATTTCCTATTGGCTCAAATGAGCACCAACAGATCAGTTTCCAAGAGTTCAAAAACAAGCTTCTAGAA CCTGGCTTAGTTGATCATATAGTTGTCTCCAACAAATCTGTTGCAAAAGTTTACGTGAAGAATGCACCCCCAAGCCAGACTGATGGTGAAGAAGTCTCAG GGCCTACAGACACCAGTCCTGTTACAGGACGTGGAGGCCAATATAAATATTACTTCAATATTGGGAGTGTGGAAGCTTTTGAGGAGAAGCTGGAAGAAGC ACAAGAGGCATTGGGGATAGACCCGCATAACTATGTACCTGTTACATATGCCTCCGAGGTTTCTTGGTTCCGAGAGATTTTGAGGTTTGCGCCAACCATA TTGCTTTTGGGAACCATCTTGTACATCGGGAAACGGATGCAAGGTGGAATAAGTATTGGAGGAGGTGGTGGACAGGGTGCTCGTGGTATCTTCAACGTAG GCAAAGCTCACATAACTAAAGTGGATAAAAATGCCAAGAACAAGGTGTACTTCAAAGATGTTGCTGGCTGTGGTGAAGCAAAAAAAGAAATTATGGAGTT TGTTCACTTCCTTAGGAACCCTAAAAAGTATGAAGAGTTGGGAGCAAAGATTCCAAAAGGCGCTCTTCTAGTTGGACCGCCTGGGACTGGGAAGACCCTT CTAGCAAAGGCAACAGCAGGGGAATCTGGTGTGCCCTTCTTGTCTATTTCTGGTTCCGATTTCATGGAGATGTTTGTTGGAGTTGGGCCATCTAGAGTGA GAAACCTCTTTCACGAAGCCAGGCAGTGTGCCCCTAGCATCGTATTCATTGACGAAATTGATGCAATTGGCAAGGCAAGGGGCCGTGGTGGCTTCAGTGG TGGAAATGATGAGCGAGAAAGTACCCTAAATCAACTGTTGGTAGAAATGGATGGATTTGCAACTACTTCAGGAGTGGTTGTGCTTGCTGGCACTAACAGA CCTGACATATTAGATAAAGCTCTTTTGAGGCCAGGCAGATTCGATAGGCAAATCACCATTGACAAACCAGATATTAAAGGGCGTGAACAAATATTTCAGA TTTACTTGAAGAAACTCAAGCTTGATCGAGAACCGTCATTCTATTCTGAAAGGCTGGCAGCCCTCACTCCGGGGTTTGCAGGAGCTGACATTGCAAATGT TTGTAACGAAGCTGCTCTAATTGCTGCCAGGAACGAAGTTCCAGAAGTCCATATGGAGCATTTTGAGTCGGCAATAGATAGAGTAATTGGTGGCTTGGAG AAGAAGAACAGGGTGATAAGCAAGCAGGAACGTCACACTGTTGCTTACCATGAATCTGGTCATGCTGTTACTGGATGGTTTTTAGAGCATGCAGAACCCC TCCTGAAAGTCACGATCGTTCCTCGTGGTACAGCTGCCCTCGGGTTTGCCCAGTATGTTCCAAATGAAAACCTTCTGATGACCAAGGAACAACTTTTCGA TATGACATGTATGACTCTCGGAGGTCGAGCTGCTGAACAGGTATTGTTGGGGAAAATCTCAACAGGAGCGCAAAATGACTTGGAGAAAGTGACAAAGATG ACCTATGCCCAAGTCGCCATCTACGGATTCAGCGAGAAGGTTGGCCTTCTATCTTTCCCCCAAAGGGAAGAGTCGTTCGAAATGAGCACGCCGTACAGCA GTGAGCAAGCCCTTGTAGAAGAACACAAGGACAAGATTGCCAAGATTGCTGAGATGCTGCTGGAGAAGGAAGTTCTCCACCAGGAGGACTTGGTTCGAGT ACTGGGTGAGAGGCTGTTTAAGGCGAGCGAGGCCACCAACTACGATAAATTCAAGCAAGGTTTCAAAGATGATGATGAAAAAAAGACAGAGCCGGACGAC AGGTGTGAATGA
AA sequence Show only first row Show all	>Lus10040785 pacid=23157738 polypeptide=Lus10040785 locus=Lus10040785.g ID=Lus10040785.BGIv1.0 annot-version=v1.0 MLNITPPAPELLPLIITILPFLLLLLLLLCFFLRNRHRHHRSSLPPGSMGWPHFGETKLLYGGDDPNSFFFSRPKKYGEEIKNHILGRPRHQGDYHSRLK RIVHSTLLPSSIRRSIGDIESLALNLLSSWDTTASSLNTLDQMKRFAFDVAIMSVFGERLERNEEEDIRRLDAMLEKGYNSMPLNFPLTKYHNAVKARDT LDKKLKAMMEKRIRESGARKGGYGGGLLGAMLSNGSSGDDSGGGFSEAQIADNIIGLIFAANDTTASVLTWLLKYLYENPNELQAVTEEQDSIKAEIKAA KRQLTWEDTKRMPLTNRVIQETLRAASVLLFLFREAVKDVEFGGYIIPKGWKVLPVFRTLHHSADFFPHPERFDPSRFQVPPRPNTYLPFGTGLHSCPGS DLARLEMLVFLHHLTTTYKWEVVGEVSRGVQYGPFPVPKGGLPIRWQNVLRGAYRKSALASGTPGGFYVNRLDEGVSFVRSYLTSIGATKPSAAKTSFSN LNSFLANPRVRRFFSSEAPKKKNYENFYPKGKKKAPKGDGKKSEFKESLNADGDTGSKKRLKIDYLTNFLIGALIVMAFPIGSNEHQQISFQEFKNKLLE PGLVDHIVVSNKSVAKVYVKNAPPSQTDGEEVSGPTDTSPVTGRGGQYKYYFNIGSVEAFEEKLEEAQEALGIDPHNYVPVTYASEVSWFREILRFAPTI LLLGTILYIGKRMQGGISIGGGGGQGARGIFNVGKAHITKVDKNAKNKVYFKDVAGCGEAKKEIMEFVHFLRNPKKYEELGAKIPKGALLVGPPGTGKTL LAKATAGESGVPFLSISGSDFMEMFVGVGPSRVRNLFHEARQCAPSIVFIDEIDAIGKARGRGGFSGGNDERESTLNQLLVEMDGFATTSGVVVLAGTNR PDILDKALLRPGRFDRQITIDKPDIKGREQIFQIYLKKLKLDREPSFYSERLAALTPGFAGADIANVCNEAALIAARNEVPEVHMEHFESAIDRVIGGLE KKNRVISKQERHTVAYHESGHAVTGWFLEHAEPLLKVTIVPRGTAALGFAQYVPNENLLMTKEQLFDMTCMTLGGRAAEQVLLGKISTGAQNDLEKVTKM TYAQVAIYGFSEKVGLLSFPQREESFEMSTPYSSEQALVEEHKDKIAKIAEMLLEKEVLHQEDLVRVLGERLFKASEATNYDKFKQGFKDDDEKKTEPDD RCE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10040785 [exp]	0	1
AT1G11480			eukaryotic translation initiat...		Lus10018497 [exp]	14.0	0.8469
AT2G20330			Transducin/WD40 repeat-like su...		Lus10024967 [exp]	21.9	0.7760
AT5G63830			HIT-type Zinc finger family pr...		Lus10003211 [exp]	25.0	0.7339
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Lus10013487 [exp]	26.3	0.7982
AT1G03280			Transcription factor TFIIE, al...		Lus10019269 [exp]	32.8	0.8092
AT1G17070			GC-rich sequence DNA-binding f...		Lus10000930 [exp]	38.2	0.8062
AT1G07360	C3HZnF	MAC5A	MOS4-associated complex subuni...		Lus10020512 [exp]	39.6	0.7689
AT3G08910			DNAJ heat shock family protein...		Lus10027803 [exp]	57.4	0.7888
AT3G51650			unknown protein		Lus10025250 [exp]	62.6	0.7703
AT1G51580			RNA-binding KH domain-containi...		Lus10034831 [exp]	63.8	0.7534

Compare expression of checked genes

Lus10040785 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.