Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G29060 540 / 0 GRAS GRAS family transcription factor (.1) AT1G07530 514 / 8e-174 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G37650 508 / 2e-172 GRAS SCL9 GRAS family transcription factor (.1) AT5G59450 504 / 2e-172 GRAS SCL11 GRAS family transcription factor (.1) AT3G46600 489 / 8e-167 GRAS GRAS family transcription factor (.1.2.3) AT2G29065 454 / 2e-152 GRAS family transcription factor (.1) AT1G07520 429 / 1e-141 GRAS GRAS family transcription factor (.1) AT1G50600 207 / 1e-58 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 205 / 1e-58 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT4G17230 204 / 7e-58 GRAS SCL13 SCARECROW-like 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016519 [exp] 704 / 0 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10024384 [exp] 520 / 2e-179 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10040790 [exp] 527 / 5e-179 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016521 [exp] 520 / 2e-176 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10023404 [exp] 518 / 4e-175 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040284 [exp] 513 / 1e-173 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10001577 [exp] 505 / 4e-171 AT1G07530 573 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10004968 [exp] 493 / 2e-166 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040789 [exp] 455 / 2e-153 AT3G46600 432 / 4e-145 GRAS family transcription factor (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G033300 [exp] 708 / 0 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G242100 [exp] 697 / 0 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.001G242000 [exp] 584 / 0 AT2G29060 488 / 9e-165 GRAS family transcription factor (.1) Potri.009G033100 [exp] 574 / 0 AT2G29060 506 / 1e-171 GRAS family transcription factor (.1) Potri.009G032700 [exp] 544 / 0 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.008G057400 [exp] 526 / 8e-179 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.001G241700 [exp] 522 / 3e-177 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241800 [exp] 522 / 1e-176 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.006G086600 [exp] 520 / 1e-176 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.009G032800 [exp] 521 / 4e-176 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10040787 pacid=23157814 polypeptide=Lus10040787 locus=Lus10040787.g ID=Lus10040787.BGIv1.0 annot-version=v1.0 ATGAACTCTCTCCTCCACGAAATCCCTAATTCAATCAACGCGTTCAAGTTCAAACACCCTTCAATCCCCTTCAACAATGGCTACAATCGGTTCGCGAATC CAGATCCTCCTCCCTCTGACTCGTCGCCGTCTTCATCGTCTTCATCGTCGTCGTCGGTGCTGTCTCCTTCTGCGTCGAATTCGGAAGGGGATTACCCGAA CAACAATGCCGTTCTCAAGTACATCCACGACATTCTCCTGGAGGAGGATCTAGAAGGTAAGAGCTGTATGTACCAGGACTGTTTCGCTCTCCAAGCCGCT GAGAAGTCTCTCTACGACGCTCTCGGTCAAGAGTATCCTCAATCGTCTTCTCCTCCCTGCCGCTCGGGTCAAACAACCCGGTCCGATCAGGTACCCGATA TAGCTGAATTCGGATTCCGGGGATCCGATTTCCGCGCCGAGGTCAAGCCGTTCAGCGTTGGCTGGACGGAGAATCTGATCTCGGATGATTCTTCTTCTTT CAAGCCGTCGATCTTTGCCGCTGATCGAGACCTATCGCCGGATTCACAGAACAGGAAGAACCACGTCCACGAGCGCGACGAGTTAGGGTTTGATTCTGTG GAAGAAGAGAGGAGTAACAAGCAATCTGCGGTTTCGAGAGATGACGATGAGCCGGAGAATACGAAGATGCTCGACGAGGTCCTGCTCTGTTCGTGCAAGC AGGTGTGTACAGCTCGCGGACATGGCCATCATCATCCGGAGAAGAAGAACGGACGAGGGAGGAAGAACAGTAATAACAATAAAAGAGGAGAAGTGGTGGA TCTGTGGACGCTGCTAACACAGTGTGCTCAAGCGGTGGCGAGCAGCGATCAGAGGACGACGAACGAGCTTCTGAAGCAGATCCGGCAGCATTCATCCGAT TTGGGAGACGGAAACCAAAGGATGGCTCATTACTTTGCTAATGCTTTAGAAACTCGTTTTGCAGGAGCTGCTACTCCCAAGTATACCGTTGATGTGAAAG GGAAGACTCCCATGGCTGAGATCCTGAAAGCATATCAGATGTTCCTCAACTCTAGTCCTTTCAAGAGGATGTCTAATTTCTTTGCAAACAGGACTGTATT CAATCTGGCTGAGAACGTTAGCAGCCTGCACATTATCGATTTTGGAATCCTGTACGGATTCCAATGGCCTTGCTTAATTCAGCGACTCTCGGAGAGGCCA GGAGGCCCTCCGAAGCTCCGGATCACAGGGATCGATTTCCCCCAGCCTGGATTCCGGCCTACTGAGAGGGTGGAGGAGACTGGAAGAAGGTTAGCTCGGT ACTGTGAGCGTTTCAACGTACCGTTCGATTACAAGGCAATTGCCCAGAAATGGGAGACAATCAAGTACGAGGATCTCAACATCAACCCCGACGAGACGAC TGTGGTGAATTGCTTATACAGGATGAGGAATCTTCCCGATGATACAGTGGCTGTCGATAGTGCGAGAGATTCCGTGTTGGGATTGATTCACAGGGTGAGA CCGGAAGTGTTCATCCACGGTATTGCGAACGGGAGTTACAACGCTCCATTCTTCACCACCAGGTTTCGAGAGGCTTTGTTCCATTACTCGTCGCTGTTCG ATATGTTTGAAGCTACTTTACAACGGGAGGACGAGCATAGACTGCTGTTTGAGAGGGAGATGTACGGGAGGGATATAATGAATGTGGTGGCTTGCGAAGG ATCGGAGCGAGTCGAGAGGCCGGAGACGTATAAGCAGTGGCAAACGAGGAACACGAGAGCTGGGTTCAGGCAGCTGCCGCTGAACGAGACCATTTTGAAG AAGGTAAGGAGTACGGTGAAATCCGAGTATGATAAGGATTTCGGTGTCGATGCTGATAGACGCTGGATGTTGCAAGGCTGGAAAGGTAGGATCATCTATG GGCTTTCTGTCTGGAAACCTGTTGATAAGGATTATTAG
AA sequence Show only first row Show all	>Lus10040787 pacid=23157814 polypeptide=Lus10040787 locus=Lus10040787.g ID=Lus10040787.BGIv1.0 annot-version=v1.0 MNSLLHEIPNSINAFKFKHPSIPFNNGYNRFANPDPPPSDSSPSSSSSSSSSVLSPSASNSEGDYPNNNAVLKYIHDILLEEDLEGKSCMYQDCFALQAA EKSLYDALGQEYPQSSSPPCRSGQTTRSDQVPDIAEFGFRGSDFRAEVKPFSVGWTENLISDDSSSFKPSIFAADRDLSPDSQNRKNHVHERDELGFDSV EEERSNKQSAVSRDDDEPENTKMLDEVLLCSCKQVCTARGHGHHHPEKKNGRGRKNSNNNKRGEVVDLWTLLTQCAQAVASSDQRTTNELLKQIRQHSSD LGDGNQRMAHYFANALETRFAGAATPKYTVDVKGKTPMAEILKAYQMFLNSSPFKRMSNFFANRTVFNLAENVSSLHIIDFGILYGFQWPCLIQRLSERP GGPPKLRITGIDFPQPGFRPTERVEETGRRLARYCERFNVPFDYKAIAQKWETIKYEDLNINPDETTVVNCLYRMRNLPDDTVAVDSARDSVLGLIHRVR PEVFIHGIANGSYNAPFFTTRFREALFHYSSLFDMFEATLQREDEHRLLFEREMYGRDIMNVVACEGSERVERPETYKQWQTRNTRAGFRQLPLNETILK KVRSTVKSEYDKDFGVDADRRWMLQGWKGRIIYGLSVWKPVDKDY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040787 [exp]	0	1
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10011408 [exp]	2.0	0.8589
AT3G46600	GRAS		GRAS family transcription fact...		Lus10040789 [exp]	3.5	0.8338
AT2G27830			unknown protein		Lus10000385 [exp]	3.5	0.8128
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10003848 [exp]	13.2	0.7553
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040284 [exp]	13.8	0.7980
AT2G27830			unknown protein		Lus10006996 [exp]	15.9	0.7709
AT1G70250			receptor serine/threonine kina...		Lus10025553 [exp]	18.7	0.7934
AT1G57790			F-box family protein (.1)		Lus10014208 [exp]	19.1	0.7926
AT2G46080			unknown protein		Lus10036385 [exp]	21.4	0.8165
AT1G70505			unknown protein		Lus10030594 [exp]	21.9	0.7170

Compare expression of checked genes

Lus10040787 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.