Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46600 419 / 5e-140 GRAS GRAS family transcription factor (.1.2.3) AT5G59450 403 / 1e-133 GRAS SCL11 GRAS family transcription factor (.1) AT1G07530 392 / 3e-127 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G29065 380 / 2e-124 GRAS family transcription factor (.1) AT2G29060 380 / 7e-124 GRAS GRAS family transcription factor (.1) AT2G37650 376 / 7e-122 GRAS SCL9 GRAS family transcription factor (.1) AT1G07520 354 / 1e-113 GRAS GRAS family transcription factor (.1) AT1G50600 181 / 2e-49 GRAS SCL5 scarecrow-like 5 (.1) AT1G66350 177 / 1e-48 GRAS RGL1 RGA-like 1 (.1) AT5G48150 172 / 5e-47 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040787 [exp] 457 / 3e-154 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040790 [exp] 429 / 6e-142 AT1G07530 762 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10024384 [exp] 419 / 9e-141 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10016521 [exp] 419 / 8e-138 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10016519 [exp] 397 / 4e-135 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10023404 [exp] 408 / 2e-133 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040284 [exp] 404 / 7e-132 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10004968 [exp] 390 / 2e-127 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10001577 [exp] 377 / 2e-122 AT1G07530 573 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G033100 [exp] 527 / 0 AT2G29060 506 / 1e-171 GRAS family transcription factor (.1) Potri.001G242000 [exp] 511 / 5e-175 AT2G29060 488 / 9e-165 GRAS family transcription factor (.1) Potri.001G242100 [exp] 494 / 8e-168 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.009G033300 [exp] 488 / 1e-165 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.006G086600 [exp] 424 / 5e-140 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.008G057400 [exp] 424 / 6e-140 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.009G032700 [exp] 424 / 6e-140 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241700 [exp] 412 / 4e-135 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241800 [exp] 408 / 4e-133 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032800 [exp] 405 / 4e-132 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10040789 pacid=23157576 polypeptide=Lus10040789 locus=Lus10040789.g ID=Lus10040789.BGIv1.0 annot-version=v1.0 ATGGATGGACTTGCTGTCAGCACTCCGCCTTCATCTTCTTCTTCCGGGACCGATTCAGAACCACCCGGCGGCAACCAATCTCCAACCTCTGGTTCAGATA AAGAGTACTCTTCTTCATTCACCAGCAACACTCCCGACTACTTTTCCTCTGTTCTCAAGTATATCAACGACATCTTAATGGAAGAGGAGCAGCTCGGCGG TGATCAGCATTGCATGGTTCAGTACAACTCTTTAGCTCTCCAAGCTGCCGAAAGATCTTTCTACCACGTCCTCGTCCACCCCAATCACGAACCTACCAAC TCTGACTTAGTGCCTTCTTTTCCGATTCAACTACAACCTTCTCTTGCGCATTTCAACAAACACCTTCCGGGCGTCAATGGCAAGTCGAGGGGAAGGAAGC ATCTCGACTACGAGTCGTCAGACGAGTACTACACCAGACGCAGTGAGCAAGCCTCCGTCGTCCACGCCGACGAATCGGCGGAATTGGAGACTATAGATAG TTGGTTCCTCCACAAGGCTAGCAACGACGAGTACATGCCATGTCCGTTATTCGACGAGTCCCGAAACAAAGCCAGCAAGAAGCTACGCGTCGAGACGCGA CTGCGGCGGCGAGCGAACATAACTGAGCCGGTGGATCTATTGACGCTGCTCACTCAATGCGCACAAACCGTCGGGAGTGGCGATCGTCGGAGCACAGCAA TCGAGCAGCTGAGCCAGATCCGGCGATTCTCTTCTCCTTCTGGAGACGCGAACCAGAGGATCGCTCATTACTTCGCGAACGGTCTGGAATCACGCCTCGC CGGAGTTCCGGCGAGGTCTTGCTCGGCCTCTGCCGCCGACGTCCTGAGAGCTTACCAGCTTTACGTCTCGATCTGCCCGTTCAGGAAGATGACGAACCGA TTCGCGAACAGGACGATCGCGAAACTCTGCCGTAAGGCGAAGGCCTTACACGTAATCGACTTTGGGATAGGGTACGGCTTCCAATGGCCCTGTTTCTTCC ATTACCTCTCCAACCTACCGGACGGGCCGCCGAAGTTGCGACTCACCGGAATCGACCTTCCACAGCCCGGATTCCGACCAGCGGAGAGGGTCGAAGAAAC CGGGCGCCGATTGAAACGACTCGCCGGCGAACTCAACATCCAGTTCGAGTACAGATCCATTGCAATGAGGTGGGAGGACATTAAATACGAACACCTTGGA ATCAATAACAGTGACGGAGACGAAGAATTCGTCGCGGTGAACTGCATCTACAGGATGAAGAACCTTCCAGACGACACTATTTCATCGTCGCCAGAAACCA GTGCGAGAGACGCGATGGTGGATCTCATCAGGAGCGTCAACCCAAAAGTGTTCATCCACGGAGTGGTGAATGGAGCCTACAACGGGCCGTTCTTCGCGAC AAGGTTTAAAGAAGCAGTGTACCATTACGCGGCGTTCTTCGACATGATGGAGGCGAACTGCGGGAAGGAAGATCATAGTAGGGCGGTGTTCGAGAGGGAG ATTGTAGGGAAGGAATTGGAGAATGTGGTGGCGTGCGAAGGTGAAGAAAGGCACGAGAGGCCGGAGACGTATAAGCGGTGGGGAGGGAGGAACGTCAGGA GCGGGTTTAGGTCGGTGAAGTTGCAGAGGGAGGTGGTGGTGAAGGTGAAGGAGGTGAAAGGGGATTACCATGAGGATTTCGTGATGGACGAGGATGGAGA TTGGTTGTTGCTTGGGTGGAAAGGCAGGATTATTCATGCCGTTTCTGCTTGGAAGCCTTGTTGA
AA sequence Show only first row Show all	>Lus10040789 pacid=23157576 polypeptide=Lus10040789 locus=Lus10040789.g ID=Lus10040789.BGIv1.0 annot-version=v1.0 MDGLAVSTPPSSSSSGTDSEPPGGNQSPTSGSDKEYSSSFTSNTPDYFSSVLKYINDILMEEEQLGGDQHCMVQYNSLALQAAERSFYHVLVHPNHEPTN SDLVPSFPIQLQPSLAHFNKHLPGVNGKSRGRKHLDYESSDEYYTRRSEQASVVHADESAELETIDSWFLHKASNDEYMPCPLFDESRNKASKKLRVETR LRRRANITEPVDLLTLLTQCAQTVGSGDRRSTAIEQLSQIRRFSSPSGDANQRIAHYFANGLESRLAGVPARSCSASAADVLRAYQLYVSICPFRKMTNR FANRTIAKLCRKAKALHVIDFGIGYGFQWPCFFHYLSNLPDGPPKLRLTGIDLPQPGFRPAERVEETGRRLKRLAGELNIQFEYRSIAMRWEDIKYEHLG INNSDGDEEFVAVNCIYRMKNLPDDTISSSPETSARDAMVDLIRSVNPKVFIHGVVNGAYNGPFFATRFKEAVYHYAAFFDMMEANCGKEDHSRAVFERE IVGKELENVVACEGEERHERPETYKRWGGRNVRSGFRSVKLQREVVVKVKEVKGDYHEDFVMDEDGDWLLLGWKGRIIHAVSAWKPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46600	GRAS		GRAS family transcription fact...		Lus10040789 [exp]	0	1
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10011408 [exp]	1.4	0.8751
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10004968 [exp]	2.8	0.8424
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040787 [exp]	3.5	0.8338
AT2G32540		ATCSLB4, ATCSLB...	CELLULOSE SYNTHASE LIKE B4, ce...		Lus10030035 [exp]	4.7	0.8234
AT3G01690			alpha/beta-Hydrolases superfam...		Lus10014890 [exp]	4.9	0.8513
					Lus10005128 [exp]	8.9	0.8356
AT2G27830			unknown protein		Lus10006996 [exp]	19.8	0.7766
AT2G27830			unknown protein		Lus10000385 [exp]	19.8	0.7813
AT5G08790	NAC	ATAF2, ANAC081	Arabidopsis NAC domain contain...		Lus10003848 [exp]	25.1	0.7541
AT4G27740			Yippee family putative zinc-bi...		Lus10023244 [exp]	26.7	0.8433

Compare expression of checked genes

Lus10040789 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.