Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07530 729 / 0 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G29060 691 / 0 GRAS GRAS family transcription factor (.1) AT2G29065 526 / 9e-179 GRAS family transcription factor (.1) AT2G37650 512 / 4e-172 GRAS SCL9 GRAS family transcription factor (.1) AT1G07520 496 / 2e-166 GRAS GRAS family transcription factor (.1) AT5G59450 467 / 3e-156 GRAS SCL11 GRAS family transcription factor (.1) AT3G46600 442 / 1e-148 GRAS GRAS family transcription factor (.1.2.3) AT1G50600 226 / 1e-64 GRAS SCL5 scarecrow-like 5 (.1) AT5G48150 221 / 5e-64 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT2G04890 205 / 8e-59 GRAS SCL21 SCARECROW-like 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016521 [exp] 1311 / 0 AT1G07530 764 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10024384 [exp] 578 / 0 AT2G37650 610 / 0.0 GRAS family transcription factor (.1) Lus10040787 [exp] 540 / 0 AT1G07530 555 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10004968 [exp] 532 / 7e-180 AT1G07530 584 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10023404 [exp] 533 / 3e-179 AT1G07530 595 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10001577 [exp] 528 / 1e-178 AT1G07530 573 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10040284 [exp] 526 / 4e-177 AT1G07530 600 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Lus10010845 [exp] 486 / 1e-162 AT2G37650 571 / 0.0 GRAS family transcription factor (.1) Lus10016519 [exp] 447 / 3e-152 AT1G07530 449 / 3e-153 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G032700 [exp] 898 / 0 AT1G07530 788 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241700 [exp] 835 / 0 AT1G07530 759 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032800 [exp] 696 / 0 AT1G07530 666 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.001G241800 [exp] 627 / 0 AT1G07530 665 / 0.0 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.006G086600 [exp] 600 / 0 AT2G37650 723 / 0.0 GRAS family transcription factor (.1) Potri.008G057400 [exp] 572 / 0 AT2G37650 568 / 0.0 GRAS family transcription factor (.1) Potri.001G242100 [exp] 564 / 0 AT2G29060 563 / 0.0 GRAS family transcription factor (.1) Potri.009G033300 [exp] 555 / 0 AT1G07530 514 / 4e-173 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.010G202300 [exp] 514 / 9e-174 AT1G07530 498 / 2e-167 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) Potri.009G032900 [exp] 513 / 2e-173 AT1G07530 488 / 2e-163 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10040790 pacid=23157775 polypeptide=Lus10040790 locus=Lus10040790.g ID=Lus10040790.BGIv1.0 annot-version=v1.0 ATGGATTCCGAATTTATTGGATCATCTGGTTCAACCAATCGGTTCGCGTTCGACGATCAACCTCTTTTCCCTGATCTATCTCGCTACACAAACTCCTCCG CCGCAAACGGATTCAGATTCAACACCTCCTCCTCCTCACCCATGGATTTCGGCGGCAATTTCATGATGGACAACTCCCTAACCTTGACTGATCTTGATGC TAGTAACTTTACTCAATCAAGCCCTGAAGGCGACTCTACAACCGATGATAATGAATTTGGGGATACGGTTCTCAAGTATATAAACCAGATGCTGATGGAA GAGGACATGGAACAAAAGCCCTGTATGTTCCATGACCCTTTAGCTGTCCAAGCTGCTGAGAAATCTTTGTATGATGTGATTGGTGAGAAGTACCCTCCTC CTTCATCACCTGCGTATTCATCTTCTTATGGTGACCAGTTCTTGGTTGATAGTCCTGGGAATGAGTCTTCCTATAGTGTTGGAAGCGATTTTGGAGGGTC CAGCAGTTCGACAGGTAATAGTGCTTGTTCAATCGATGTTCATTGGAATAGCGAGTTGGGAGATTCGAAGGTGAAGTTTATGAAGATGCCTCTGCCTACT GATTTTGTGTTCCGATCTCCTCCTTTGTCTAGACAGAAGATTGAGAGGGCGAGTAATAGTAATGGTAATGGTAATGATGTGGTGAGTTCATATGTTGGGA ATTTTGGGATGCCGAACTTTTTCAGTGGGAGTGAATTGGAGTTGCAGTTCAAGAAAGGGGTAGAGGAAGCTAACAAGTTCCTTCCAAAGGTGAGTCCACT GGTTATCGACTTGGAGAATAAGAATTTCACTCCAAAATTGGAGGTTGCTGTGAAAGCTGAAAAGGAAGAAGAGAACTATTTGCCTTATTTGAAGGTGAAG AAGAATCATGATAGGGAGGATGATGATTTTAAGGAAGAAAGGAGCAACAAGCAGTCTGCAGTGTATGTTGATGAATCCGAGCTCTCTGAGATGTTTGACA AGTTACTAGTATGTAACGGCGGGAAGGAAGGAGAGAACCCATCCTGCATCCATAACTATGAATCTCCGGAGAATGTAGCGAAATGTTCTCAGCAGAACAG GAAGGCTCGTGCCAAGAGACAAGGAAGCAAGAAGGGTGAAGTGGTGGATTTACGAACTCTTCTAGCCACGTGTGCACAAGCAGTCTCTAGTGACGACAGA AGAACTGCTAATGAATTAATGAGGCAGATCAGGCAGCATTCTTCACCGTTCGGTGATGGGTCTCAGAGGCTTGCTCATTGCTTTGCCAATGCCCTCGAAG CTCGTCTTGCTGGAAATGGGACTCAGATATACACTGCACTGTCAGCTGACAAGACTTCCGCTGCAGATATGTTGAAAGCTTATCAAGCTTACATTACGGC CTGCCCGTTTAATAAGGTAGCCATTATTTTTGCAAACCAGAGCATTATGCATGCAGCTACCGATGCCAATGCAAGCACAGTTCATATCATAGATTTCGGT GTCTTGTATGGTTTCCAATGGCCTGCTTTCATCCATCGCCTTTCAAAAAGATCCGGTGGACCTCCAAAGCTTCGGATGACCGGCATAGAGCTTCCCCAAA GTGGGTTTCGGCCGGGGGAAAGAGTTCAAGCAACGGGGAGGAGATTGGCTAAGTACTGCGAACGGCATAACGTCCCTTTCGAGTATAATGCCATAGCAAA GAAATGGGAGAACATTGAACTCGATGAGCTCAAGATCAATAAAAATGAGTTTCTTGCTGTGAATTGCCTGTTTCGAGGTAAGAACCTGCTCGATGAGACG GTATTAGTCAGCAGCCCGAGAGATGCTGTTCTCAGACTGATAAGGATGATAAATCCAGGCATATTCGTTCATGCTATCGTGAACGGATCGTACAATGCAC CGTTTTTCATGACGAGGTTTCGAGAATCGTTCTTCCATTTCTCGTCCTTGTTCGACATGTTGGATGCCAACATGGGTCGTGAGGACCAGATGAGGATGAA GTTTGAGAAAGAGTTCTACGGCCGGGAGGCGATCAATGTGATGGCTTGCGAAGGGTCGGAGAGGGTTGAGAGACCCGAGACATACAAGCAATGGCAGGTA CGAAGCACGAGGGCCGGGATGAAGCAGCTCCCTCTAGACCCTGTCATGATGAAGAGGCTGAAATGCAAGGTAAGAGGGAAATACCACGAGGATTTTGTGG TGAATGAAGATGGTGAATGGCTATTGCAGGGCTGGAAGGGGCGAGTTATCTACGCTTCCTCGGCTTGGATTCCTGCATGA
AA sequence Show only first row Show all	>Lus10040790 pacid=23157775 polypeptide=Lus10040790 locus=Lus10040790.g ID=Lus10040790.BGIv1.0 annot-version=v1.0 MDSEFIGSSGSTNRFAFDDQPLFPDLSRYTNSSAANGFRFNTSSSSPMDFGGNFMMDNSLTLTDLDASNFTQSSPEGDSTTDDNEFGDTVLKYINQMLME EDMEQKPCMFHDPLAVQAAEKSLYDVIGEKYPPPSSPAYSSSYGDQFLVDSPGNESSYSVGSDFGGSSSSTGNSACSIDVHWNSELGDSKVKFMKMPLPT DFVFRSPPLSRQKIERASNSNGNGNDVVSSYVGNFGMPNFFSGSELELQFKKGVEEANKFLPKVSPLVIDLENKNFTPKLEVAVKAEKEEENYLPYLKVK KNHDREDDDFKEERSNKQSAVYVDESELSEMFDKLLVCNGGKEGENPSCIHNYESPENVAKCSQQNRKARAKRQGSKKGEVVDLRTLLATCAQAVSSDDR RTANELMRQIRQHSSPFGDGSQRLAHCFANALEARLAGNGTQIYTALSADKTSAADMLKAYQAYITACPFNKVAIIFANQSIMHAATDANASTVHIIDFG VLYGFQWPAFIHRLSKRSGGPPKLRMTGIELPQSGFRPGERVQATGRRLAKYCERHNVPFEYNAIAKKWENIELDELKINKNEFLAVNCLFRGKNLLDET VLVSSPRDAVLRLIRMINPGIFVHAIVNGSYNAPFFMTRFRESFFHFSSLFDMLDANMGREDQMRMKFEKEFYGREAINVMACEGSERVERPETYKQWQV RSTRAGMKQLPLDPVMMKRLKCKVRGKYHEDFVVNEDGEWLLQGWKGRVIYASSAWIPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10040790 [exp]	0	1
AT2G02710		PLPC, PLPB, PLP...	PAS/LOV PROTEIN C, PAS/LOV PRO...		Lus10036711 [exp]	1.7	0.8568
AT4G21210		ATRP1	PPDK regulatory protein (.1.2)		Lus10006758 [exp]	4.5	0.8470
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10004317 [exp]	7.4	0.8160
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10002383 [exp]	8.5	0.8405
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10039079 [exp]	8.7	0.8339
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10043453 [exp]	8.9	0.8171
AT5G05200			Protein kinase superfamily pro...		Lus10030509 [exp]	9.3	0.8457
AT1G57790			F-box family protein (.1)		Lus10017027 [exp]	10.6	0.8083
AT5G24320			Transducin/WD40 repeat-like su...		Lus10032436 [exp]	11.8	0.8271
AT3G49060			U-box domain-containing protei...		Lus10014772 [exp]	12.0	0.8141

Compare expression of checked genes

Lus10040790 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.