Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46130 140 / 2e-42 MYB PFG3, ATMYB111 ATMYB48, ATMYB48-3, ATMYB48-1, ATMYB48-2 myb domain protein 48 (.1.2.3.4) AT5G59780 134 / 4e-40 MYB ATMYB59, ATMYB59-1, ATMYB59-3, ATMYB59-2 myb domain protein 59 (.1.2.3) AT4G13480 87 / 8e-21 MYB ATMYB79 myb domain protein 79 (.1) AT3G24310 85 / 3e-20 MYB MYB305, ATMYB71 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) AT1G68320 84 / 9e-20 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT1G25340 82 / 5e-19 MYB ATMYB116 myb domain protein 116 (.1.2) AT3G53200 81 / 5e-19 MYB ATMYB27 myb domain protein 27 (.1) AT3G30210 80 / 4e-18 MYB ATMYB121 myb domain protein 121 (.1) AT3G27810 79 / 4e-18 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT5G40350 77 / 2e-17 MYB ATMYB24 myb domain protein 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005886 [exp] 265 / 1e-90 AT3G46130 265 / 1e-89 myb domain protein 48 (.1.2.3.4) Lus10023711 [exp] 86 / 2e-20 AT3G24310 247 / 2e-81 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10014453 [exp] 85 / 5e-20 AT3G24310 240 / 1e-78 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Lus10041435 [exp] 82 / 9e-19 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10023918 [exp] 81 / 1e-18 AT3G53200 172 / 1e-53 myb domain protein 27 (.1) Lus10034338 [exp] 81 / 2e-18 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10009037 [exp] 80 / 2e-18 AT1G68320 231 / 1e-75 myb domain protein 62 (.1) Lus10034372 [exp] 80 / 2e-18 AT3G30210 195 / 5e-62 myb domain protein 121 (.1) Lus10014415 [exp] 80 / 2e-18 AT3G53200 174 / 3e-54 myb domain protein 27 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G235500 [exp] 206 / 1e-67 AT3G46130 276 / 3e-94 myb domain protein 48 (.1.2.3.4) Potri.009G027300 [exp] 196 / 1e-63 AT3G46130 279 / 3e-95 myb domain protein 48 (.1.2.3.4) Potri.010G064000 [exp] 87 / 4e-21 AT3G24310 255 / 4e-85 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.008G173400 [exp] 86 / 9e-21 AT3G24310 258 / 2e-86 MYB DOMAIN PROTEIN 71, myb domain protein 305 (.1) Potri.004G115600 [exp] 84 / 3e-20 AT3G30210 227 / 9e-75 myb domain protein 121 (.1) Potri.008G122100 [exp] 84 / 2e-19 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.006G122100 [exp] 82 / 3e-19 AT3G53200 181 / 6e-57 myb domain protein 27 (.1) Potri.015G046200 [exp] 83 / 5e-19 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.017G071500 [exp] 80 / 5e-19 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.012G055600 [exp] 82 / 9e-19 AT1G68320 244 / 1e-79 myb domain protein 62 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040861 pacid=23157680 polypeptide=Lus10040861 locus=Lus10040861.g ID=Lus10040861.BGIv1.0 annot-version=v1.0 ATGACCCCTCAAGAAGAGAAGCTTGTGGTCGAGCTCCACGCCAAATGGGGGAACAGATGGTCAAGAATTGCTCGTAAGCTACCGGGGCGCACCGATAATG AAATCAAGAACTACTGGAGGACTCATATGAGGAAGAAGGCACAGGAGAGGAAAAGGGCATTATCGCCATCGTCCCCTTCGAATAATTCCTCTGTCTCCAA TACTACTACTGTGGACTCATCACCTTTCCAAGAGACTGGAGACCGTAGCTTCTACGACACTGGCGGGAACAACCAAGTGGTCGTAGCTGCTGCAGCTGGG AAAACTAACGATTCGATGCAGGTAGGTGACAAAGGTTACTCGATGGACGACATATGGAAAGACATAGAGAACACAATCGAACCGGTCTCTTCTGCGGGGT TTAACGACAATTTCTCTGGTCCTTCAATCGTCTCTCCGCCTTGGGAGTATAATTTTCATGACACACTCTGGAAGCTGGACGAAGAGGAGAGTAAAGCGTT TCTTCCTTATGACTACGGAACCGTGTTTTTAACTGGCTAG
AA sequence Show only first row Show all	>Lus10040861 pacid=23157680 polypeptide=Lus10040861 locus=Lus10040861.g ID=Lus10040861.BGIv1.0 annot-version=v1.0 MTPQEEKLVVELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQERKRALSPSSPSNNSSVSNTTTVDSSPFQETGDRSFYDTGGNNQVVVAAAAG KTNDSMQVGDKGYSMDDIWKDIENTIEPVSSAGFNDNFSGPSIVSPPWEYNFHDTLWKLDEEESKAFLPYDYGTVFLTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10040861 [exp]	0	1
AT3G19990			unknown protein		Lus10010154 [exp]	11.0	0.9058
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Lus10005886 [exp]	12.3	0.9216
AT4G12240	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10024570 [exp]	13.0	0.8816
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10024916 [exp]	14.8	0.9019
AT1G02305			Cysteine proteinases superfami...		Lus10010091 [exp]	22.6	0.8975
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10006502 [exp]	28.1	0.9022
AT3G50210			2-oxoglutarate (2OG) and Fe(II...		Lus10006259 [exp]	29.6	0.9035
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10003945 [exp]	35.0	0.8958
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036537 [exp]	36.6	0.8977
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10036536 [exp]	38.1	0.8986

Compare expression of checked genes

Lus10040861 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.