Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65205 307 / 1e-105 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G10050 304 / 2e-104 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G47360 56 / 3e-09 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT3G03330 57 / 4e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G67730 53 / 7e-08 ATKCR1, YBR159, KCR1 beta-ketoacyl reductase 1 (.1) AT1G24470 51 / 2e-07 ATKCR2, KCR2 beta-ketoacyl reductase 2 (.1) AT3G03350 51 / 2e-07 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G47350 51 / 3e-07 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT5G50690 48 / 2e-06 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 48 / 2e-06 ATHSD4 hydroxysteroid dehydrogenase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004925 [exp] 414 / 6e-148 AT5G10050 410 / 5e-146 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016429 [exp] 259 / 1e-86 AT5G10050 349 / 1e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019684 [exp] 238 / 1e-78 AT5G10050 355 / 3e-124 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016430 [exp] 226 / 1e-73 AT5G10050 323 / 8e-112 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10019683 [exp] 213 / 1e-68 AT5G10050 315 / 3e-108 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10011729 [exp] 163 / 5e-49 AT5G65205 240 / 1e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10001511 [exp] 57 / 2e-09 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10031448 [exp] 56 / 9e-09 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10006248 [exp] 52 / 2e-07 AT1G67730 451 / 1e-160 beta-ketoacyl reductase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G086600 [exp] 326 / 2e-112 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G080900 [exp] 291 / 5e-99 AT5G10050 379 / 2e-133 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G007300 [exp] 165 / 8e-50 AT5G10050 210 / 6e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 56 / 5e-09 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G056100 [exp] 56 / 7e-09 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.010G052400 [exp] 54 / 2e-08 AT1G67730 320 / 3e-109 beta-ketoacyl reductase 1 (.1) Potri.010G052300 [exp] 54 / 3e-08 AT1G67730 449 / 7e-160 beta-ketoacyl reductase 1 (.1) Potri.016G048800 [exp] 49 / 8e-07 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.008G181700 [exp] 49 / 1e-06 AT1G67730 431 / 8e-153 beta-ketoacyl reductase 1 (.1) Potri.006G089700 [exp] 47 / 3e-06 AT5G06060 320 / 6e-111 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10040878 pacid=23157584 polypeptide=Lus10040878 locus=Lus10040878.g ID=Lus10040878.BGIv1.0 annot-version=v1.0 ATGGATTCCGTCGGCAAAGAAGTAGTTCTGATCACCGGCTGCTCCGAGGGCGGCATCGGCCACGCCCTGGCCAGAGAGTTCGCCGACAATGACTGTCAGG TCGTCGCCACCAGCCGATCGGTGAAATCCATGGGAGACGTGCAGCGAGACTCGAAATTGTGCATATATCAATTTCTTGAAATTCCTAGCTCAATTCTATA TTGGTGGCCAGAATTTGATAGTTTGGGGGAGCTTGCTGGCTTCTGGCATCCAGTATTAATTCCTCTCTGTTCCATGAGGATGGTTCAGGCTGTTGTCCCT CACATGGCGTCTAGGAGAAAAGGGAAAATTGTGAACCTTGGAAGCGTTACGGTGATGGCACCTACACCTTGGTCCGGGGTTTATACCGCAACTAAAGCTG CTATTCACGCATTGACTGATACCTTAAGGCTGGAACTGAAGCCGCTGGGGATCGATGTGATCAATGTAGTTCCAGGAGCCATCAGGTCAAACATAGGAAA CTCTGCAGCAGATAACTACAGTAAGATGCCGGAGTTGAAACTGTACAAGCCGTTTGAGGATGCAATCAAGCAGAGAGCACATCTCTCCCAAGGCATCAAG TCCACACCTACCCACAAATTTGCGAAAGATACAGTAGCGGTCATTCTGAAAAAGAATCCTCCTTTGTGGTTCTCCTCTGGCCATTCCTCTACCCTCGTGG CCATCATGCATCATTTGCCACTTTCCATCAAAGATTTCATCATCCGCCGTATTGTTAAATGTTAG
AA sequence Show only first row Show all	>Lus10040878 pacid=23157584 polypeptide=Lus10040878 locus=Lus10040878.g ID=Lus10040878.BGIv1.0 annot-version=v1.0 MDSVGKEVVLITGCSEGGIGHALAREFADNDCQVVATSRSVKSMGDVQRDSKLCIYQFLEIPSSILYWWPEFDSLGELAGFWHPVLIPLCSMRMVQAVVP HMASRRKGKIVNLGSVTVMAPTPWSGVYTATKAAIHALTDTLRLELKPLGIDVINVVPGAIRSNIGNSAADNYSKMPELKLYKPFEDAIKQRAHLSQGIK STPTHKFAKDTVAVILKKNPPLWFSSGHSSTLVAIMHHLPLSIKDFIIRRIVKC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65205			NAD(P)-binding Rossmann-fold s...		Lus10040878 [exp]	0	1
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10020827 [exp]	1.4	0.8871
AT5G10050			NAD(P)-binding Rossmann-fold s...		Lus10004925 [exp]	1.7	0.8453
AT4G02920			unknown protein		Lus10027996 [exp]	6.6	0.8288
AT2G37110			PLAC8 family protein (.1)		Lus10023176 [exp]	7.2	0.8457
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Lus10002378 [exp]	11.2	0.8256
AT5G64230			unknown protein		Lus10033177 [exp]	12.0	0.8169
AT2G20860		LIP1	lipoic acid synthase 1 (.1)		Lus10031630 [exp]	18.2	0.8124
AT1G14780			MAC/Perforin domain-containing...		Lus10037426 [exp]	20.0	0.8277
AT5G10770			Eukaryotic aspartyl protease f...		Lus10042426 [exp]	24.2	0.7466
AT1G16180			Serinc-domain containing serin...		Lus10008709 [exp]	25.9	0.8176

Compare expression of checked genes

Lus10040878 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.