Plant FIBer expression Database

Lus10040894 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G50300 620 / 0 ATAZG2 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1)
AT3G10960 508 / 4e-176 ATAZG1 AZA-guanine resistant1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009102
[exp]
474 / 5e-163 AT3G10960 780 / 0.0 AZA-guanine resistant1 (.1)
Lus10030548
[exp]
469 / 8e-161 AT3G10960 881 / 0.0 AZA-guanine resistant1 (.1)
Lus10025246
[exp]
464 / 3e-158 AT3G10960 780 / 0.0 AZA-guanine resistant1 (.1)
Lus10012895
[exp]
462 / 1e-157 AT3G10960 873 / 0.0 AZA-guanine resistant1 (.1)
Lus10034287
[exp]
110 / 4e-29 AT5G50300 91 / 1e-22 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G090000
[exp]
682 / 0 AT5G50300 736 / 0.0 ARABIDOPSIS THALIANA AZA-GUANINE RESISTANT2, Xanthine/uracil permease family protein (.1)
Potri.013G083300
[exp]
481 / 2e-165 AT3G10960 903 / 0.0 AZA-guanine resistant1 (.1)
Potri.016G133800
[exp]
462 / 7e-158 AT3G10960 847 / 0.0 AZA-guanine resistant1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0062 APC PF00860 Xan_ur_permease Permease family
Representative CDS sequence
>Lus10040894 pacid=23157809 polypeptide=Lus10040894 locus=Lus10040894.g ID=Lus10040894.BGIv1.0 annot-version=v1.0
ATGCCTTCTTCTTCTTCTTCTTCCCCTCCTTCCTTCTTCACCAAAGTAGAGACCTCCTTAAACAACGCCGTATCCAACAGCCGGTTCGGAAAATTCTTCA
AGCTCCAACCCCGAAAGACCACCTTCACCAAGGAGCTCCGTGCTGCCACCGCCACGTTCATCACAATGGCTTACATCATTTCTGTCAACGCCACCATCCT
CGCCGACTCCGGGGGCACCTGCTCCCCCGCCGACGAGGGCTACCAGAGCTGCCTAGACACAATCAAGAGTGATCTAGTGGTCGCCACTGCCTTGACAGCC
ATGCTTGCTTCTTTTGCCATGGGAGTTTTAGCTAATCTTCCTTTTGGACTTGCTCCCGGTATGGGCCCAAACGCTTACTTGGCCTACAATTTGGTGGGCT
TCCATGGGTCCGGCTCCATGTCTTACCGGACCGCAATGGCCGTTGTTTTGGTGGAAGGATGTGTGTTTCTCGCAATTGCCGTTCTCGGTCTTCGGTCCAA
GATCGCCAGGCTAATACCGAGGCCGGTGAGGCTAGGCTGCGCGGCGGGGATTGGGCTTTTTATTGCGTTTGTGGGCTTACAGGTCCATCAAGGTTTGGGC
CTTGTTGGGCCAGATCCATCCACTCTGGTGACCCTTGCGGCCTGCTCGAGGACAAATCCGGTCACTGGAGAGTGTGTCGACGGGAAGATGACGAACCCCA
CTTTCTGGCTAGGATGCGTCGGGTTTTTAATAACATGTTACGGACTGATGAAGAACGTGAAGGGTAGTATGATATATGGGATTATGTTTGTGACAGTTGT
GTCATGGGTTCGAGGCACTAGTGTCACATACTTCCCTCACACGTCAACTGGTGACAAAAACTTCAATTACTTCAAGAAAGTGGTTGACTTCCACGAGATT
AAGTCAACGGCAGGAGCCATAAGTTTCAGAGATTTCAATAGGAGTGAGGTATGGGTTGCACTAGTGACATTGCTATACGTGGATGTTGTGTCGACAACTG
GGACGTTGTACACCATGGCTGAAGTTGGGGAGCTTGTGGACGAGAGAGGGAGCTTCGAAGGCGAGTACATGGCGTTCATGGTTGATGCAGGATCAACGGT
AGTTGGGTCTGCGCTGGGGGTTTCACCGGTGGCGACGTTTGTGGAGTCAACGGCTGGGATGAGGGAAGGTGGGAGGACGGGGTTGACTGCGGTGGTTGTT
GGGTTATATTTTCTGATGTCGATATTCTTCACTCCGTTGTTGAGCAGCATCCCGCCGTGGGCAGTTGGGCCTTCGTTGGTGATGGTTGGGGTGATGATGA
TGAAAGTGGTGAAGGATATTGATTGGGGTGATTTGAAGGAAGGTGTGCCTGCGTTTTTGACAATGCTGCTGATGCCGTTGACTTATTCGATTTCGAATGG
GATAATTGGTGGGATAGGGATGTACATTGCTTTGAATATGTATGAGTATGTAGTGAAGTTGGTGAAGTGGGTTGTTGAGATGAGGAGAGTAGTGGCGGAT
GAACATAATCAGGTATCAGCTACTATTGCTGCTGCTCCTAGGGAAGCGAATCGTGTTTAG
AA sequence
>Lus10040894 pacid=23157809 polypeptide=Lus10040894 locus=Lus10040894.g ID=Lus10040894.BGIv1.0 annot-version=v1.0
MPSSSSSSPPSFFTKVETSLNNAVSNSRFGKFFKLQPRKTTFTKELRAATATFITMAYIISVNATILADSGGTCSPADEGYQSCLDTIKSDLVVATALTA
MLASFAMGVLANLPFGLAPGMGPNAYLAYNLVGFHGSGSMSYRTAMAVVLVEGCVFLAIAVLGLRSKIARLIPRPVRLGCAAGIGLFIAFVGLQVHQGLG
LVGPDPSTLVTLAACSRTNPVTGECVDGKMTNPTFWLGCVGFLITCYGLMKNVKGSMIYGIMFVTVVSWVRGTSVTYFPHTSTGDKNFNYFKKVVDFHEI
KSTAGAISFRDFNRSEVWVALVTLLYVDVVSTTGTLYTMAEVGELVDERGSFEGEYMAFMVDAGSTVVGSALGVSPVATFVESTAGMREGGRTGLTAVVV
GLYFLMSIFFTPLLSSIPPWAVGPSLVMVGVMMMKVVKDIDWGDLKEGVPAFLTMLLMPLTYSISNGIIGGIGMYIALNMYEYVVKLVKWVVEMRRVVAD
EHNQVSATIAAAPREANRV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G50300 ATAZG2 ARABIDOPSIS THALIANA AZA-GUANI... Lus10040894
[exp]
0 1
AT4G12080 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localize... Lus10004318
[exp]
4.5 0.8506
AT5G14740 BETACA2, CA18, ... CARBONIC ANHYDRASE 18, BETA CA... Lus10016443
[exp]
6.2 0.7795
AT5G48130 Phototropic-responsive NPH3 fa... Lus10001738
[exp]
10.1 0.8233
AT1G07630 PLL5 pol-like 5 (.1) Lus10025348
[exp]
13.7 0.8365
AT3G11600 unknown protein Lus10043404
[exp]
14.4 0.8027
AT2G15790 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptid... Lus10012059
[exp]
22.0 0.8431
AT2G39010 PIP2E, PIP2;6 PLASMA MEMBRANE INTRINSIC PROT... Lus10021475
[exp]
25.9 0.7868
Lus10025897
[exp]
29.8 0.8174
AT5G43180 Protein of unknown function, D... Lus10025134
[exp]
33.7 0.7318
AT3G26610 Pectin lyase-like superfamily ... Lus10029121
[exp]
43.7 0.7173

Lus10040894 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.