Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03140 224 / 2e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 179 / 2e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 176 / 8e-55 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 131 / 2e-37 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 130 / 2e-37 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47130 124 / 2e-35 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 120 / 6e-34 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 120 / 2e-33 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47140 108 / 3e-29 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G42960 105 / 6e-28 ASD, ATA1 TAPETUM1, TAPETUM 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005927 [exp] 259 / 1e-89 AT4G03140 208 / 2e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10041518 [exp] 195 / 1e-61 AT3G26770 352 / 2e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012575 [exp] 188 / 9e-60 AT3G26770 353 / 1e-122 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021320 [exp] 143 / 3e-42 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 140 / 5e-41 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014228 [exp] 129 / 5e-37 AT3G26770 227 / 3e-73 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032192 [exp] 127 / 5e-37 AT3G26770 149 / 2e-44 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005262 [exp] 127 / 5e-36 AT3G51680 236 / 8e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10026419 [exp] 127 / 6e-36 AT3G51680 367 / 9e-128 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135510 [exp] 238 / 3e-79 AT4G03140 400 / 8e-141 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.014G145800 [exp] 203 / 2e-65 AT3G26760 348 / 8e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.002G236700 [exp] 196 / 1e-62 AT3G26760 342 / 2e-118 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 150 / 3e-45 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G105900 [exp] 143 / 3e-42 AT3G51680 412 / 4e-146 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.019G125600 [exp] 142 / 9e-42 AT3G51680 394 / 8e-139 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G129100 [exp] 140 / 6e-41 AT3G51680 383 / 3e-134 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 136 / 9e-40 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 130 / 2e-37 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 129 / 8e-37 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10040909 pacid=23179649 polypeptide=Lus10040909 locus=Lus10040909.g ID=Lus10040909.BGIv1.0 annot-version=v1.0 ATGTACAACAACGCCGGCATCGCGTGCAGAACCCCACCGAGCATCGCTGACCTCGACCTCAAACATTTCGACAAAGTAATGTCGATAAACATTAAGGGAG TGGTGGCCGGAGTAAAGCACGCGGCCCGAGTTATGGTCCCGACTGGTACCGGGGGATCGATACTGTGCACGGGGAGCGTGACGGGAATCGTGGGAGGGAT GGCTCAGCATACCTACTCCATCTCTAAGGCCGCGGTTATAGCGGTCGTGAAATTGGCTGCAGCGGAGATGTGCCAGTTTGGGGTGAGGGTGAACTGCATT TCGCCGTTCTTTGTCCCTACCAGGTTTGTGATGGAGGAGCTGGAAGGGATTTACAACGGGGCGGATCGAGAGAGGCTCGAGGAGATGGTGTATGCGTTGG GTTGTTTGACAGGTGGGAGGTGTGAGCCTGGTGATATAGCTAATGCAGCTTTGTTTCTTGCTTCGGATGATGCCGAGTATGTTAGTGGACATAACCTGGT TGTGGATGGTGGGTTTCCTTCCTTTAAGAACTTGGGTTTGCCTCACAGAGATCAGTTTATGTAA
AA sequence Show only first row Show all	>Lus10040909 pacid=23179649 polypeptide=Lus10040909 locus=Lus10040909.g ID=Lus10040909.BGIv1.0 annot-version=v1.0 MYNNAGIACRTPPSIADLDLKHFDKVMSINIKGVVAGVKHAARVMVPTGTGGSILCTGSVTGIVGGMAQHTYSISKAAVIAVVKLAAAEMCQFGVRVNCI SPFFVPTRFVMEELEGIYNGADRERLEEMVYALGCLTGGRCEPGDIANAALFLASDDAEYVSGHNLVVDGGFPSFKNLGLPHRDQFM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03140			NAD(P)-binding Rossmann-fold s...		Lus10040909 [exp]	0	1
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10011443 [exp]	2.4	0.8665
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10041449 [exp]	3.6	0.8711
AT4G32290			Core-2/I-branching beta-1,6-N-...		Lus10001503 [exp]	5.7	0.8471
AT1G68800	TCP	TCP12, BRC2, TC...	BRANCHED 2, TCP domain protein...		Lus10032465 [exp]	8.0	0.8234
AT3G06500		A/N-InvC	alkaline/neutral invertase C, ...		Lus10017095 [exp]	9.0	0.8482
AT1G25440	CO	COL16	B-box type zinc finger protein...		Lus10034322 [exp]	9.8	0.8287
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10005923 [exp]	11.4	0.8401
AT5G61380		AtTOC1, TOC1, A...	PSEUDO-RESPONSE REGULATOR 1, T...		Lus10000566 [exp]	13.0	0.8148
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10010856 [exp]	14.1	0.8167
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10025060 [exp]	15.0	0.8078

Compare expression of checked genes

Lus10040909 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.