Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04180 508 / 2e-174 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G58290 117 / 3e-28 RPT3 regulatory particle triple-A ATPase 3 (.1) AT3G09840 118 / 1e-27 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT2G27600 115 / 2e-27 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT3G53230 117 / 4e-27 ATPase, AAA-type, CDC48 protein (.1) AT5G03340 116 / 4e-27 ATPase, AAA-type, CDC48 protein (.1) AT1G45000 109 / 1e-25 AAA-type ATPase family protein (.1.2) AT1G80350 110 / 3e-25 FTR, FRC2, FRA2, BOT1, ATKTN1, AAA1, LUE1, ERH3, MAD5 KATANIN 1, FAT ROOT, FURCA2, FRAGILE FIBER 2, ECTOPIC ROOT HAIR 3, BOTERO 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G28000 110 / 6e-25 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 110 / 7e-25 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009809 [exp] 746 / 0 AT4G04180 565 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10004891 [exp] 117 / 5e-28 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10021442 [exp] 119 / 7e-28 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 119 / 7e-28 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 119 / 8e-28 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 119 / 8e-28 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10020589 [exp] 117 / 9e-28 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10037385 [exp] 118 / 2e-27 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10028752 [exp] 117 / 3e-27 AT1G64110 1165 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G004000 [exp] 612 / 0 AT4G04180 682 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.017G108200 [exp] 120 / 3e-28 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G028000 [exp] 117 / 3e-28 AT5G58290 781 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.010G237100 [exp] 117 / 3e-28 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.009G144300 [exp] 117 / 4e-28 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.006G031000 [exp] 116 / 6e-28 AT5G58290 771 / 0.0 regulatory particle triple-A ATPase 3 (.1) Potri.012G088200 [exp] 119 / 7e-28 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 119 / 7e-28 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 119 / 9e-28 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 118 / 1e-27 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10040913 pacid=23179993 polypeptide=Lus10040913 locus=Lus10040913.g ID=Lus10040913.BGIv1.0 annot-version=v1.0 ATGAGAATAGTCAGTCGAGGGAAGCAGGAACCTGTACGTAACATCTCTTCAGCAAGCAAAGATTTGGCCTCTCCACCGCCGATCAGAACGATACCACCGC CGATCAGTACGATAGCAGTGAGGCTATATTACAGCAGAGCCTGGAAAGGAATTATCTGTTACCATGGCTATTTTAGGCAGACTGTTGACAACTGCTCGCT CTCTCTGCTCGAACGCCGCCTCAAAATCCTTCTTCAGTCTCCCAAGTGGACTCACTTCACGATATCCCCATCATTACCTTATCCGGATCTGGAGGAGACG GCCAAGAAAGAACGGAAACGAATTGAGGATGTGCTCATCAGTAAAGGAATCAAATATGGCTCTTATCCTCGCTTCACAGTTGCTGTCAAGGGCCAAAAGA TAACGGTCAAGTTCCAGATTTCTCCTTCCTGTGATATTACTCAGTTGGTTGCTCGTCTCGTATCACATTTGGGATTAAAAACAGACGACTCTGGTGGTGT TTCAGATATGTTACTACGGTCTTGGGAAAGTCATCCAGTGAGTAAAGACCAAAGTATGGACAAGTCTCATAAAGGAGATAACGATAAGCGTGGCGGGGAA CTGTGTATTGTCTTATTTCACTCACTCGTGAATACGGACAAAGCGGTTAGGATTTGGGGCATTAAAATTGAGTTCTTAAAGCAAGGGACCTTTAGTGATG TAGAGCTTGATGCTTTGGCATCTGTTTTACAACTGGCCAATGGAAAATTAAAGAGCTTGGGAAGAAAACCTGCAGAATCTGCTGCACGGGCACCTACAAT AGATCAATCAGTTGCCAGTCTGAAGGCCATGGGAGTGAGAGTGTATGGACTCGATGCACCTCTTATAAAGTCTACAAGCAATGACATTTCGTGGGACAAC ATAGCTGGTTATGATAAGCAAAACGGTTCTTATCAGTTCGTAGCATTACCGTATAGAGAAATAGAAGACACTATCTTGTTGGCACTACACAATCTTGAAA TCTATGATAACATTGCTCGTGGGACTCGAGACAAGTTTGAGTCAAATAGACCTCGTGCAGTGCTTTTTGAAGGTCCCCCGGGCACAGGGAAAACATCTTG TGCACGTGTTATTGCCAATCAAGCGGGTGTGCCGCTGCTGTACGTGCCACCGGAAGTAGTCGTGTCGAAATATTATGGGGAAAGTGAACGTCAATTGGGT AAAGTGTGCTCACTTGCTAATGAACTTCCCAATGGTGCTATCATATTTCTAGACGAGATTGATTCTCTTGCTATTACTCGTGATGGTGAAATGCATGAAG CCACTCGTAGACTTTTATCAGTGTTGCTACGACAGATTGATGGATTCGAACAAGACAAGAAAGTTGTAGTCATTGCGGCCACAAATAGGAAACAGGACCT TGATCCTGCCTTGATCAGTCGGTTCGATTCAGTGATTACATTTGGTCTGCCTGATCAATCGAATCGCCAGGAAATTATCGGCCAGTACGCAAAGCACCTT ACGAAATCTGATCTAGAGAGATTGGCTACTGTCACTGAAAACCTGTCTCTTGATACAATCAGCCTATCTGGGAGGGACATTAAGGATGTGTGCCAACAAG CAGACGGTCATGGGCATCCAAGAGGACAAGCTGGTGAAGAAGAAGATGGGGAGAGTAGTCTTCCACCTCTTTCGGAGTATATGGATAGTGCTGTAAGCCG GCAGAAGGCACTTCAGCTCGACATTCCGGACCGGAGCAGTGAAGTGAAGATCCTGGATAAAACATTCGGTTGTGTTATTTAG
AA sequence Show only first row Show all	>Lus10040913 pacid=23179993 polypeptide=Lus10040913 locus=Lus10040913.g ID=Lus10040913.BGIv1.0 annot-version=v1.0 MRIVSRGKQEPVRNISSASKDLASPPPIRTIPPPISTIAVRLYYSRAWKGIICYHGYFRQTVDNCSLSLLERRLKILLQSPKWTHFTISPSLPYPDLEET AKKERKRIEDVLISKGIKYGSYPRFTVAVKGQKITVKFQISPSCDITQLVARLVSHLGLKTDDSGGVSDMLLRSWESHPVSKDQSMDKSHKGDNDKRGGE LCIVLFHSLVNTDKAVRIWGIKIEFLKQGTFSDVELDALASVLQLANGKLKSLGRKPAESAARAPTIDQSVASLKAMGVRVYGLDAPLIKSTSNDISWDN IAGYDKQNGSYQFVALPYREIEDTILLALHNLEIYDNIARGTRDKFESNRPRAVLFEGPPGTGKTSCARVIANQAGVPLLYVPPEVVVSKYYGESERQLG KVCSLANELPNGAIIFLDEIDSLAITRDGEMHEATRRLLSVLLRQIDGFEQDKKVVVIAATNRKQDLDPALISRFDSVITFGLPDQSNRQEIIGQYAKHL TKSDLERLATVTENLSLDTISLSGRDIKDVCQQADGHGHPRGQAGEEEDGESSLPPLSEYMDSAVSRQKALQLDIPDRSSEVKILDKTFGCVI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04180			P-loop containing nucleoside t...		Lus10040913 [exp]	0	1
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	5.9	0.8176
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10019129 [exp]	7.9	0.7551
AT1G16800			P-loop containing nucleoside t...		Lus10037303 [exp]	14.8	0.7827
AT2G31970		ATRAD50, RAD50	DNA repair-recombination prote...		Lus10016643 [exp]	17.0	0.7629
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10007881 [exp]	23.1	0.7727
AT5G45610		SUV2	SENSITIVE TO UV 2, protein dim...		Lus10012118 [exp]	24.5	0.7485
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Lus10014662 [exp]	25.5	0.7646
AT1G69020			Prolyl oligopeptidase family p...		Lus10004631 [exp]	29.7	0.7612
AT5G48120			ARM repeat superfamily protein...		Lus10037557 [exp]	31.4	0.7413
AT3G05740		RECQI1	RECQ helicase l1 (.1)		Lus10042451 [exp]	36.7	0.7009

Compare expression of checked genes

Lus10040913 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.