Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03000 1041 / 0 PEX6 peroxin 6 (.1) AT3G53230 268 / 6e-77 ATPase, AAA-type, CDC48 protein (.1) AT5G03340 267 / 6e-77 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 247 / 1e-69 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G56690 228 / 6e-62 CIP111 Cam interacting protein 111 (.1) AT3G01610 224 / 1e-61 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT5G08470 223 / 3e-60 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT1G53750 182 / 9e-50 RPT1A regulatory particle triple-A 1A (.1) AT3G05530 178 / 1e-48 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT2G03670 181 / 4e-48 CDC48B cell division cycle 48B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009814 [exp] 1701 / 0 AT1G03000 1168 / 0.0 peroxin 6 (.1) Lus10037385 [exp] 276 / 5e-80 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 271 / 1e-78 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 265 / 7e-76 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 244 / 1e-68 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 243 / 4e-68 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 240 / 4e-67 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001402 [exp] 231 / 5e-66 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023123 [exp] 238 / 3e-65 AT5G08470 1163 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G133000 [exp] 1178 / 0 AT1G03000 1165 / 0.0 peroxin 6 (.1) Potri.015G080600 [exp] 275 / 1e-79 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 274 / 4e-79 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 271 / 2e-78 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 269 / 1e-77 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 269 / 1e-77 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.013G151600 [exp] 236 / 8e-66 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.001G174100 [exp] 219 / 7e-59 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.006G035000 [exp] 215 / 1e-57 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.001G128700 [exp] 199 / 6e-54 AT2G03670 766 / 0.0 cell division cycle 48B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10040918 pacid=23179751 polypeptide=Lus10040918 locus=Lus10040918.g ID=Lus10040918.BGIv1.0 annot-version=v1.0 ATGGTTGATAGAAGGAGGAGAAATCCCCTGGTCCTTTCTTCCACCAAAGTCCTTATCAATTCTCTCTTGCTTTCTTCCTTCGATCATGACGACCCATCCG CCGTCAGCAATCTCTCTACTCAGAATTCGTCCCCCAAGCTACTACACCTACGAGCCGGAATTCTCCGTTCCTCTCTGGACGCTTCCGACTCGAAACAAAC TTCTGTCGACGATTCTGCTTTGATTGGCCTCTCGCTCTCAGTTCTCAAGAAGCTCGCAGTAACCTCCGGTTCCTTGGTGTTTGTCAAGAACCTTGAGACG AATGTGGAAAGGATGGCTCAGGTGGTTGTTTTGGATCTTCCAAATGACTATCCCCAAGCTTCTACTGTAAAACGGGAGACCTCTAGTTTCCCCACTACAA TGGTTCTCTTTCCTTCGTGCGTGTTTCCTTCAGATGATATTCTATTGCAAGACCAGGAGATTGCCTACATTTCTCCTTTACTAGCTTTTAACCTAGACTT GCACGTGTCCTGCTTGAAATCACTCGTACACCTCGGGGATGAAACCTTGATGTCATTGTTCAAGTCCAAAGCTGTTCATGATTCTCCTGGAGAGGCCCAT GTGGATTCTTTAGTTAAGGTAGGATTGCATCCCATAGCTCAACTGCCAAGATATGCCTCACACTTACGGGTATCGTTCATTAAGATACCAGAATGTGGCA TTCTCGAATCTTTGAAGGGAAGTTCTTCGATTGAAACTGAAGATCGGCAAGCAATGATTGATTCGGCATTGCATAGATACTTTGAAGTTGATAGGCATCT GGCAACAGGTGATGTCTTCAGCATCCAAATAAATTGGGATTGCCATTCAACTTTCTGTGTTCCTTGCAGTCAAAGATTGCAAAATGGAAACAACGAAACT ATTTATTTCAAGGTTGTGGCCATGGAGCCATCAGATGAAGCATTCCTCCGAGTCAATCATGCTCGAACAGCCCTTGTGCTTGGTGGGACTGCTTGTTCTG CTCTCCCTCCTGATCTGCTCATTGGTTTACCGAAAAGTCACATGCCTCTCCAAGCAGAGACAAGTTGCAGTCCTGTTATACGGTGTAGCTGGTGTGTTTC TCCTGCTTTGTTCCCCTGCATATATTACAAATGTTATAGGAATCCACATCTGCGACTCTCTACTGAACTAGCTCAAGCATTTAAGACAGCTCAAAGATAC TCACCAGCAATACTTGTACTCCGCCACTTTGATGTATTTCGAGATATCTCTCATGATGGTTCATCAAATGACCGTCTTGGTCTCATGTCTGAGGCTGCCT CAGTAATACGGGAATTCACTGAACCAGGTGCTGAAAGTGTGGGGTATGAAGATAGGTCAAATCCCAATCTTCCTTTTGAAACTTACAAGAAGAAGCCTCA GGTGCTCTTCGTAGCAGCTGCAGAAAGTTCTGAAGGTCTACCACCAATTGTTCGACGTTGCTTCAGCCATGAGATAAGCATGGGCTCTTTATCTGAGGAG CAGAGGGCTGAAATGTTTTCTCAGTTACTGCAAAATGATTCTGAGCTCCTCCATAGTGAGTTGGATGATACAGTAAAGGATGTAGTTGCACAGACTTCTG GTTTCATGCCTAGGGATTTGAACGCTTTAATTGCGGATGCTGGTGCGAACCTGATAACTAGAGCTGATGTTCCAGTTGAAAAGGATCAGGATGAGGACTT GAATAGCTTCTGTATGGTCCAAAAATTGCATGAGAATAACTCAGACATTGCCATGACTCGAGTTTTAGAGAAGGAATGCCTGGATAAAGCACTGAATCGT TCAAAGAAAAGGAATGCATCGGCATTAGGAACTCCAAAGGTTCCTAACATAAAGTGGGAAGATGTTGGTGGTCTTGAGGATGTGAAGAAATCTATTCTTG ATACCGTGCAGTTGCCGCTTCTGCATAAAGATTTATTTTCCTCTGGGTTGAGAAAACGCTCTGGTGTCCTTCTATATGGTCCTCCTGGAACAGGAAAAAC CTTGTTAGCAAAAGCTGTTGCAACAGAGTGCTCCTTGAATTTTCTCAGTGTTAAAGGGCCCGAATTAATCAATATGTACATAGGAGAGTCGGAGAAGAAT GTCAGGGACATTTTTCAAAAGGCTAGATCAGCACGTCCTTGTGTCATTTTCTTTGACGAACTTGATTCTCTTGCTCCTGCTCGAGGTGCCTCCGGAGACT CTGGGGGTGTTATGGATAGGGTGGTTTCTCAGATGCTCGCAGAGATTGATGGCCTGAGTGATTCAACACAGGACTTATTCATCATTGGAGCAAGCAATAG ACCAGATCTTATTGACCCAGCCCTTCTTCGTCCTGGACGATTTGACAAGTTGCTATATGTTGGAGTAAACTCTGATGCATCTTACAGGGAGGGGGTTCTC AAGGCGCTGACACGAAAGTTCACATTGCATGAAGACGTGTCACTTTATTCAGTAGCAAAGAAATGTCCCCCAAATTTCACTGGTGCAGACATGTATGCCC TGTGTGCAGATGCTTGGTTCCAAGCAGCAAAGCGAAAGCTCTTGGATTTGGATTCTGACACTAGTGAAGCAGTTGATCAAGCTGACTCTGTGGTTGTTGA ATATGAAGACTTCATGAAGGTAGTGGTGGAGCTATCACCCTCGTTATCAATGGCTGAGCTTAAGAAGTATGAGGTGCTGCGGGAAAAACTCGAGGGCCCT TCAAACACGTAA
AA sequence Show only first row Show all	>Lus10040918 pacid=23179751 polypeptide=Lus10040918 locus=Lus10040918.g ID=Lus10040918.BGIv1.0 annot-version=v1.0 MVDRRRRNPLVLSSTKVLINSLLLSSFDHDDPSAVSNLSTQNSSPKLLHLRAGILRSSLDASDSKQTSVDDSALIGLSLSVLKKLAVTSGSLVFVKNLET NVERMAQVVVLDLPNDYPQASTVKRETSSFPTTMVLFPSCVFPSDDILLQDQEIAYISPLLAFNLDLHVSCLKSLVHLGDETLMSLFKSKAVHDSPGEAH VDSLVKVGLHPIAQLPRYASHLRVSFIKIPECGILESLKGSSSIETEDRQAMIDSALHRYFEVDRHLATGDVFSIQINWDCHSTFCVPCSQRLQNGNNET IYFKVVAMEPSDEAFLRVNHARTALVLGGTACSALPPDLLIGLPKSHMPLQAETSCSPVIRCSWCVSPALFPCIYYKCYRNPHLRLSTELAQAFKTAQRY SPAILVLRHFDVFRDISHDGSSNDRLGLMSEAASVIREFTEPGAESVGYEDRSNPNLPFETYKKKPQVLFVAAAESSEGLPPIVRRCFSHEISMGSLSEE QRAEMFSQLLQNDSELLHSELDDTVKDVVAQTSGFMPRDLNALIADAGANLITRADVPVEKDQDEDLNSFCMVQKLHENNSDIAMTRVLEKECLDKALNR SKKRNASALGTPKVPNIKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKN VRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYREGVL KALTRKFTLHEDVSLYSVAKKCPPNFTGADMYALCADAWFQAAKRKLLDLDSDTSEAVDQADSVVVEYEDFMKVVVELSPSLSMAELKKYEVLREKLEGP SNT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03000		PEX6	peroxin 6 (.1)		Lus10040918 [exp]	0	1
					Lus10001309 [exp]	1.4	0.9155
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030176 [exp]	1.7	0.8957
AT3G04490			unknown protein		Lus10022024 [exp]	5.0	0.8878
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10010375 [exp]	9.1	0.9141
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10034070 [exp]	17.3	0.8735
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021545 [exp]	19.0	0.8575
AT3G22380		TIC	time for coffee (.1.2)		Lus10010535 [exp]	20.5	0.8536
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10015384 [exp]	21.2	0.8377
AT3G53090		UPL7	ubiquitin-protein ligase 7 (.1...		Lus10008636 [exp]	22.1	0.8883
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Lus10023123 [exp]	23.0	0.8094

Compare expression of checked genes

Lus10040918 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.