Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61220 307 / 4e-104 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 298 / 9e-101 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 298 / 1e-100 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G51030 167 / 1e-49 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 167 / 2e-49 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 162 / 1e-47 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09750 64 / 2e-11 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55290 57 / 3e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G63380 56 / 6e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT3G46170 56 / 8e-09 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014688 [exp] 383 / 4e-134 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 380 / 5e-133 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014689 [exp] 377 / 3e-128 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006893 [exp] 364 / 1e-126 AT3G61220 313 / 4e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 362 / 2e-125 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000242 [exp] 356 / 2e-124 AT3G61220 218 / 2e-70 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040933 [exp] 342 / 7e-118 AT3G61220 342 / 1e-118 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014694 [exp] 322 / 5e-110 AT3G61220 369 / 4e-129 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014693 [exp] 300 / 3e-101 AT3G61220 347 / 3e-120 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157000 [exp] 334 / 6e-115 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 315 / 5e-107 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 311 / 7e-106 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 307 / 4e-104 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 302 / 4e-102 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 288 / 9e-97 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 268 / 8e-89 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235600 [exp] 249 / 2e-81 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G158200 [exp] 236 / 9e-76 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156866 [exp] 199 / 7e-63 AT1G01800 206 / 5e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10040932 pacid=23179975 polypeptide=Lus10040932 locus=Lus10040932.g ID=Lus10040932.BGIv1.0 annot-version=v1.0 ATGTCAAGAACCCTTTTGACTCGCTGGAAATTGCCCAGAAAAAGAGGCTTAAGAGAGCAGCTGGGGATGAATGATGATCCCCAGTCGTCAGCTGATAGGA TTGCAGTGGTAACAGGAGGAAACAAAGGGATCGGATTCGAGATATGCAAGCAATTAGCTTCCAACGGGATACTGGTGATCTTGACAGCGAGAGACGAAAC CAGAGGCCAACAAGCTGTGAACAAGCTCAAACATGACTGTATTAATCATGACGGCATCTCTGATAACATATTATTCCATCAACTTGATGTGGCAGATAGT TCCAGCATCTCTTCTTTTGCACATTTCATCACAACCCACTTTGCCAAACTCGACATCCTGGTTAATAATGCTGGAATAATTGGTACCATTTGGCGCGAAG ATGTGTTGAAATCTACAGATCTTAATCAGCCTGATTGGCAAGACAAGATGAAGGAGGTTACCTTTGATACTTATGACTTGACAGAGGAATGCTTGAAAAC TAATTACTATGGTGCCAAAGGGATGATGGAAGCCTTCTTGCCATTGCTTCAGTTGTCTCATTCTCCCAGGATTGTCAATGTTTCTTCCATAACCTCAAGC TTGACGAACATCAACAACGAATGGACAAAAGGAGTACTGGGCGATGCTGAGAATTTGTCGGAGGGAAGAATCGAACAAGTGATTCAACAATTTCTGAAAG ACTTCAAGGAAGGTTCGTTGGAAACTAAGGGGTGGCCGTTCTTCACACCCGGCTATGTCATCTCGAAAGCGGCTCTGAATGCATACACAAGGATGGTAGC TAAGAAATACCCAAATAATTTCTGCATCAACGTTGTGTGCCCTGGATACGTGAAGACCGATATCAACTTCCAGACTGGGACGCAACTTCCTGCGGATGCA GCTAAGGGTGTTGTGAAGTTGGCATTGTTGCCTCACGGTGGCCCTTCTGGTCGCTTCTTCTCTCAGAATCAGGAGACGCCATTTTGA
AA sequence Show only first row Show all	>Lus10040932 pacid=23179975 polypeptide=Lus10040932 locus=Lus10040932.g ID=Lus10040932.BGIv1.0 annot-version=v1.0 MSRTLLTRWKLPRKRGLREQLGMNDDPQSSADRIAVVTGGNKGIGFEICKQLASNGILVILTARDETRGQQAVNKLKHDCINHDGISDNILFHQLDVADS SSISSFAHFITTHFAKLDILVNNAGIIGTIWREDVLKSTDLNQPDWQDKMKEVTFDTYDLTEECLKTNYYGAKGMMEAFLPLLQLSHSPRIVNVSSITSS LTNINNEWTKGVLGDAENLSEGRIEQVIQQFLKDFKEGSLETKGWPFFTPGYVISKAALNAYTRMVAKKYPNNFCINVVCPGYVKTDINFQTGTQLPADA AKGVVKLALLPHGGPSGRFFSQNQETPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10040932 [exp]	0	1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10016467 [exp]	3.2	0.9365
					Lus10019190 [exp]	7.7	0.9153
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000426 [exp]	10.2	0.8897
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001118 [exp]	10.6	0.8896
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10001109 [exp]	11.4	0.8908
					Lus10001241 [exp]	13.7	0.8948
AT5G49960			unknown protein		Lus10013455 [exp]	14.4	0.9096
					Lus10023025 [exp]	16.4	0.8260
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Lus10012320 [exp]	18.4	0.8882
					Lus10014873 [exp]	25.5	0.9064

Compare expression of checked genes

Lus10040932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.