Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G61220 342 / 1e-118 SDR1 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G24190 338 / 6e-117 SDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT1G01800 321 / 4e-110 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G51030 201 / 6e-63 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G61830 186 / 5e-57 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G59710 182 / 9e-56 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G09750 61 / 2e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 60 / 3e-10 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G50600 58 / 2e-09 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50700 58 / 2e-09 HSD1 hydroxysteroid dehydrogenase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014694 [exp] 384 / 9e-135 AT3G61220 369 / 4e-129 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014688 [exp] 377 / 5e-132 AT3G61220 348 / 8e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014693 [exp] 368 / 1e-128 AT3G61220 347 / 3e-120 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014690 [exp] 367 / 3e-128 AT3G61220 335 / 2e-115 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10040932 [exp] 363 / 4e-126 AT3G61220 327 / 3e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006894 [exp] 358 / 5e-125 AT3G61220 325 / 1e-111 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10014689 [exp] 367 / 2e-124 AT3G61220 336 / 2e-112 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10006893 [exp] 338 / 8e-117 AT3G61220 313 / 4e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10008413 [exp] 276 / 3e-92 AT2G24190 273 / 3e-91 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G157000 [exp] 371 / 5e-130 AT3G61220 406 / 9e-144 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080100 [exp] 340 / 2e-117 AT3G61220 350 / 3e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156800 [exp] 340 / 2e-117 AT3G61220 363 / 1e-126 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156300 [exp] 337 / 2e-116 AT3G61220 367 / 6e-128 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156600 [exp] 328 / 8e-113 AT3G61220 348 / 7e-121 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.014G080000 [exp] 321 / 4e-110 AT3G61220 332 / 2e-114 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235500 [exp] 297 / 1e-100 AT3G61220 313 / 7e-107 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.004G235600 [exp] 280 / 4e-94 AT3G61220 285 / 1e-95 short-chain dehydrogenase/reductase 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.009G158200 [exp] 256 / 6e-84 AT2G24190 283 / 1e-94 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G156866 [exp] 224 / 3e-73 AT1G01800 206 / 5e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10040933 pacid=23179633 polypeptide=Lus10040933 locus=Lus10040933.g ID=Lus10040933.BGIv1.0 annot-version=v1.0 ATGGCGGAAACAGCAACCAAGAGGTATATAGCAGTTGTGACGGGAGGAAACAAAGGGATCGGGTTCGAGATTTGCAGGCAGTTGGCTTCTAACGGCGTCC TGGTGGTCCTAACAGCCAGAGACAATAGCAGAGGCCTCCAAGCCGTTGAAAAGCTCCGACAAGATGACAACAACATCGTCTTTCACCAGCTTGATGTCGC CGACACCTCCAGCATTTCTCACCTCGCCGATTTCATCACAACCCAATTCGGGAAGCTCGACATTTTAGTGAACAATGCTGCAATATTTGGAGCCATATTT CAGCAACGTGATGATGGGGAACCGACGATCAACTGGCTAGATTCCATCGTTGATACATACGAACTGGCGGAAGAATGCTTGAAGACGAACTACTACGGTG CCAAGGGAATGATTGAAACGTTTCTGCCGTTACTTCGACTGTCTGAATCACCCAGGATCGTCAACGTCTCTGCTGGCATGGGCAAGTTAATGAATATAAA AAACGAGTGGGCCAAAGGAATACTGGACGATGCTGAGAACCTGACAGAAGAGAGAATCGAGCAAATGCTGAACCAGTTTCTGAAAGATTTCAAGGAAGAT TATCATTCATTGGAAGCTAAAAGTTGGCCTAGCAAGGCTGCTGCATACACACTGTCCAAAGCTGCACTGAATGCATACACAAGGATCGTAGCGGCGAAGA ACCACCATCCAAAGCTCTGCATCAATTGCGTTTGTCCTGGATATGTGAAGACTGATATCAGCATGAACACTGGGTTTGCAACTCCTGAAGAAGGTGCTCG TGGCCCAGTGAAGTTGGCCTTGTTGCCCAATGGTGGGCCTTCTGGCTGCTTCTTTGATCAACTTGAGGAGGCCAGTTTCTGA
AA sequence Show only first row Show all	>Lus10040933 pacid=23179633 polypeptide=Lus10040933 locus=Lus10040933.g ID=Lus10040933.BGIv1.0 annot-version=v1.0 MAETATKRYIAVVTGGNKGIGFEICRQLASNGVLVVLTARDNSRGLQAVEKLRQDDNNIVFHQLDVADTSSISHLADFITTQFGKLDILVNNAAIFGAIF QQRDDGEPTINWLDSIVDTYELAEECLKTNYYGAKGMIETFLPLLRLSESPRIVNVSAGMGKLMNIKNEWAKGILDDAENLTEERIEQMLNQFLKDFKED YHSLEAKSWPSKAAAYTLSKAALNAYTRIVAAKNHHPKLCINCVCPGYVKTDISMNTGFATPEEGARGPVKLALLPNGGPSGCFFDQLEEASF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10040933 [exp]	0	1
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10002535 [exp]	13.5	0.7674
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10026623 [exp]	41.4	0.7557
AT1G21840		UREF	urease accessory protein F (.1...		Lus10027319 [exp]	61.2	0.7740
AT1G76350		NLP5	Plant regulator RWP-RK family ...		Lus10016018 [exp]	64.4	0.7475
AT2G36880		MAT3	methionine adenosyltransferase...		Lus10023007 [exp]	69.6	0.7316
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Lus10016515 [exp]	86.7	0.7564
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	108.7	0.7334
AT1G53530			Peptidase S24/S26A/S26B/S26C f...		Lus10005571 [exp]	141.4	0.7430
AT3G25430			Polynucleotidyl transferase, r...		Lus10002539 [exp]	150.6	0.7200
AT2G43590			Chitinase family protein (.1)		Lus10032794 [exp]	167.2	0.7346

Compare expression of checked genes

Lus10040933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.