Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18140 752 / 0 LAC1, ATLAC1 laccase 1 (.1) AT5G60020 549 / 0 LAC17, ATLAC17 laccase 17 (.1) AT2G29130 536 / 0 LAC2, ATLAC2 laccase 2 (.1) AT5G03260 532 / 0 LAC11 laccase 11 (.1) AT2G38080 495 / 1e-170 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G01190 474 / 1e-162 LAC10 laccase 10 (.1) AT2G30210 471 / 5e-161 LAC3 laccase 3 (.1) AT5G05390 468 / 7e-160 LAC12 laccase 12 (.1) AT5G09360 465 / 6e-159 LAC14 laccase 14 (.1) AT5G58910 462 / 4e-158 LAC16 laccase 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009827 [exp] 957 / 0 AT1G18140 696 / 0.0 laccase 1 (.1) Lus10009645 [exp] 903 / 0 AT1G18140 801 / 0.0 laccase 1 (.1) Lus10019122 [exp] 571 / 0 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10034439 [exp] 570 / 0 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10034614 [exp] 564 / 0 AT5G60020 934 / 0.0 laccase 17 (.1) Lus10026512 [exp] 551 / 0 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10002227 [exp] 537 / 0 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10023189 [exp] 536 / 0 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10027782 [exp] 519 / 2e-180 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G040400 [exp] 790 / 0 AT1G18140 840 / 0.0 laccase 1 (.1) Potri.012G048900 [exp] 788 / 0 AT1G18140 858 / 0.0 laccase 1 (.1) Potri.015G040600 [exp] 787 / 0 AT1G18140 840 / 0.0 laccase 1 (.1) Potri.015G040700 [exp] 681 / 0 AT1G18140 726 / 0.0 laccase 1 (.1) Potri.001G054600 [exp] 571 / 0 AT5G60020 905 / 0.0 laccase 17 (.1) Potri.001G401300 [exp] 570 / 0 AT5G60020 904 / 0.0 laccase 17 (.1) Potri.006G087500 [exp] 568 / 0 AT5G60020 806 / 0.0 laccase 17 (.1) Potri.001G341600 [exp] 557 / 0 AT5G60020 896 / 0.0 laccase 17 (.1) Potri.001G401100 [exp] 550 / 0 AT5G60020 881 / 0.0 laccase 17 (.1) Potri.007G023300 [exp] 544 / 0 AT5G03260 889 / 0.0 laccase 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10040936 pacid=23179889 polypeptide=Lus10040936 locus=Lus10040936.g ID=Lus10040936.BGIv1.0 annot-version=v1.0 ATGTATGAGTACTCGATCCAACACCAACAGGTGGAGTGGAAGAAGGTGAGTCGTTTGTGTAGTACAAGGCAAGTCCTGACTGTGAACGGAGAGTATCCAG GGCCGACAATTGCTGTCAATGAAGGCGACAATGTCGAAATCAAGGTCACAAATAGCGTCCACAGGAACACTACTATCCATTGGCATGGAGTAAAGCAGAT CCGAAGTGGTTGGGCGGACGGACCGGCTTACATCACACAGTGCCCGATACAAGAAGGGAAATCCTACAAGTACAAGTTCAGTGTTAGTGAACAAAGAGGA ACCTTACTTTGGCATGCCCACTACGGTTGGCAACGGGCCTCAATCTATGGTGCATTCATCATATATCCTAGATTGCCATACCCATTCTTGCAACCACATA AACCCATTCATGCTGAAATCCCCATTATTTTTGGTGAGTGGTGGGATCACGATGAAGACGAACTTGAAAAGACAATGCTAGCAACAGGAGCAGGTGCATT CATTTCTCTAGCTTACACCATCAATGGACTTCCTGGTCCCCTTTATCCTTGCTCAAATCCAGACACATTCACGGCCACGGTGGACTACGGGAAGACGTAC ATGCTACGAGTAATCAACGCGGCACTAGCCGATGAGCTCTTCTTCTCCATATCCAAACACACCCTAACTGTGGTGGAAGTTGACGCAGTCTATATAAAGC CATTCACCACCAATGCCATTATGGTAGCTCCCGGCCAAACCACCACCCTTCTCATCACCGCCGACCAACTCCCTGGCCCCACCGGAGCTTTTGTCATGGC CGGCACGCCTTACGTAACATCATTCTTCCCCTTTGACAACTCCACTACGGTAGGGTTCTTAAGATACAACACTACCATCGGCAGGGCTGGAACTCAAACT CAGGAGCTCTCGCAGCTGTCTGGTCGTTTGTCTCCTGAAAACTTGCCCAAAATGGAAGACACCAATTTCGCAACAACATTTGCAGGCAAGATTAAGTCCC TCAACACGGTTGAATACCCGTGCAATGTACCTCAGCAGATCGACAAGCGGGTGATCATGACCATCAGTCTGAACCTCCAAGACTGTCCCCACGGAAAGAC GTGTACTGGTTACCAAGGGAAGATGTTCTTCGCTTCGATCAACAACCAGTCGTTTGTTCGCCCTACGACTTCCTTCCTCCAAACCCACTACTTGGCCGGT TCGAAGAACGATTCAGGCTTCCCCGAACGGCCCCCAAACGTGTTTAACTACACGGGGGGAGACCCGTTGACCATGAACGCTAACATGGAGTTTGGTTCAA AGATGATAGTTGTGCCATATGGCACCAGGATCGAGATGGTGCTACAAGGGACAAATCTCTTGAACGTGGAGAACCACCCGATCCATATCCACGGGCACAA CTTCTTTGTGGTGGGGACTGGGTTTGGGAACTTTGACGAGTCAAAGGATCCAAAGAAGTACAATTTGGTTGACCCTCCGGAGAGGAACACAGTGGCTGTT CCAACCGGTGGTTGGGCCGCTATCCGGATCAAGGCCGATAACCCGGGTGTTTGGTTCATACATTGCCACTTGGAGCCGCACACTTCGTGGGGTCTTGCGA CCGGATTTGTTGTGGAGGATGGTCCTTTACCCTCTCAACGACTGCTTCCTCCCCCTAAAGATTTTCCAGCCTGCTAG
AA sequence Show only first row Show all	>Lus10040936 pacid=23179889 polypeptide=Lus10040936 locus=Lus10040936.g ID=Lus10040936.BGIv1.0 annot-version=v1.0 MYEYSIQHQQVEWKKVSRLCSTRQVLTVNGEYPGPTIAVNEGDNVEIKVTNSVHRNTTIHWHGVKQIRSGWADGPAYITQCPIQEGKSYKYKFSVSEQRG TLLWHAHYGWQRASIYGAFIIYPRLPYPFLQPHKPIHAEIPIIFGEWWDHDEDELEKTMLATGAGAFISLAYTINGLPGPLYPCSNPDTFTATVDYGKTY MLRVINAALADELFFSISKHTLTVVEVDAVYIKPFTTNAIMVAPGQTTTLLITADQLPGPTGAFVMAGTPYVTSFFPFDNSTTVGFLRYNTTIGRAGTQT QELSQLSGRLSPENLPKMEDTNFATTFAGKIKSLNTVEYPCNVPQQIDKRVIMTISLNLQDCPHGKTCTGYQGKMFFASINNQSFVRPTTSFLQTHYLAG SKNDSGFPERPPNVFNYTGGDPLTMNANMEFGSKMIVVPYGTRIEMVLQGTNLLNVENHPIHIHGHNFFVVGTGFGNFDESKDPKKYNLVDPPERNTVAV PTGGWAAIRIKADNPGVWFIHCHLEPHTSWGLATGFVVEDGPLPSQRLLPPPKDFPAC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10040936 [exp]	0	1
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10032641 [exp]	2.0	0.9746
AT5G10530			Concanavalin A-like lectin pro...		Lus10033781 [exp]	3.2	0.9704
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10021257 [exp]	3.9	0.9766
AT4G18380			F-box family protein (.1.2)		Lus10040978 [exp]	6.3	0.9598
					Lus10041161 [exp]	6.5	0.9686
AT5G06720		ATPA2	peroxidase 2 (.1)		Lus10008168 [exp]	6.9	0.9629
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Lus10025045 [exp]	7.1	0.9666
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Lus10021029 [exp]	7.7	0.9629
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10010545 [exp]	8.7	0.9726
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10043308 [exp]	9.4	0.9684

Compare expression of checked genes

Lus10040936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.