Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40220 108 / 6e-27 AP2_ERF ATABI4, GIN6, SUN6, SIS5, SAN5, ISI3, ABI4 SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SALOBRENO 5, IMPAIRED SUCROSE INDUCTION 3, GLUCOSE INSENSITIVE 6, ABA INSENSITIVE 4, Integrase-type DNA-binding superfamily protein (.1) AT3G57600 78 / 2e-16 AP2_ERF DREB2F Integrase-type DNA-binding superfamily protein (.1) AT5G18450 76 / 2e-15 AP2_ERF DREB2G Integrase-type DNA-binding superfamily protein (.1) AT1G75490 74 / 3e-15 AP2_ERF DREB2D Integrase-type DNA-binding superfamily protein (.1) AT3G11020 73 / 2e-14 AP2_ERF DREB2B DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE/CRT-binding protein 2B (.1) AT3G16280 71 / 4e-14 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G77200 69 / 2e-13 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G16750 67 / 3e-13 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G32800 68 / 4e-13 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G35700 67 / 4e-13 AP2_ERF ATERF38 ERF family protein 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009834 [exp] 247 / 3e-80 AT2G40220 137 / 1e-37 SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SALOBRENO 5, IMPAIRED SUCROSE INDUCTION 3, GLUCOSE INSENSITIVE 6, ABA INSENSITIVE 4, Integrase-type DNA-binding superfamily protein (.1) Lus10011319 [exp] 76 / 2e-15 AT3G57600 207 / 5e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10023633 [exp] 75 / 4e-15 AT2G40340 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1) Lus10003581 [exp] 72 / 7e-15 AT2G40340 139 / 6e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10034902 [exp] 74 / 8e-15 AT2G40340 172 / 7e-52 Integrase-type DNA-binding superfamily protein (.1) Lus10012210 [exp] 74 / 9e-15 AT3G57600 207 / 4e-66 Integrase-type DNA-binding superfamily protein (.1) Lus10010632 [exp] 72 / 1e-14 AT1G75490 174 / 6e-55 Integrase-type DNA-binding superfamily protein (.1) Lus10006127 [exp] 71 / 8e-14 AT1G75490 155 / 8e-47 Integrase-type DNA-binding superfamily protein (.1) Lus10024298 [exp] 71 / 9e-14 AT1G75490 159 / 1e-48 Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G071100 [exp] 120 / 2e-31 AT2G40220 135 / 7e-37 SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SALOBRENO 5, IMPAIRED SUCROSE INDUCTION 3, GLUCOSE INSENSITIVE 6, ABA INSENSITIVE 4, Integrase-type DNA-binding superfamily protein (.1) Potri.010G186400 [exp] 107 / 5e-26 AT2G40220 102 / 2e-24 SUCROSE UNCOUPLED 6, SUGAR-INSENSITIVE 5, SALOBRENO 5, IMPAIRED SUCROSE INDUCTION 3, GLUCOSE INSENSITIVE 6, ABA INSENSITIVE 4, Integrase-type DNA-binding superfamily protein (.1) Potri.016G053200 [exp] 78 / 3e-16 AT3G57600 256 / 5e-85 Integrase-type DNA-binding superfamily protein (.1) Potri.006G054500 [exp] 76 / 1e-15 AT3G57600 234 / 1e-76 Integrase-type DNA-binding superfamily protein (.1) Potri.005G233300 [exp] 72 / 3e-14 AT1G75490 161 / 2e-49 Integrase-type DNA-binding superfamily protein (.1) Potri.002G029400 [exp] 71 / 4e-14 AT1G75490 163 / 3e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.008G073600 [exp] 71 / 6e-14 AT2G40340 129 / 7e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.010G183700 [exp] 69 / 4e-13 AT5G05410 124 / 1e-33 DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DRE-binding protein 2A (.1.2) Potri.016G126100 [exp] 69 / 6e-13 AT2G38340 96 / 4e-22 dehydration response element-binding protein 19, Integrase-type DNA-binding superfamily protein (.1) Potri.013G135600 [exp] 69 / 7e-13 AT2G20880 180 / 2e-52 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10040944 pacid=23179899 polypeptide=Lus10040944 locus=Lus10040944.g ID=Lus10040944.BGIv1.0 annot-version=v1.0 ATGGACGTCGACGACAACAATCCTCCAAACCCTAATACTAATACCTCATCACCCCCTTCATCTCCTCATTACAACAACTCTCCCTCTCTCCCCAATTCCC CATCCTCCTCCGCCGCCGGCTCCAAGAAGGGCAAGTTGTCGGGCAAAGGTGGGCCCGACAATGCCAAGTTCCGTTACAGAGGGGTTCGCCAGCGCAGCTG GGGTAAGTGGGTCGCCGAGATCCGTGAGCCGAGGAAGAGGACTCGCAAGTGGCTAGGCACTTTCTCCACCGCCGAGGACGCCGCACGCGCCTACGACCGC GCCGCCCTCATCCTCTACGGCTCACGCGCTCAGCTCAACTTGCAACCCTCCGCCGCCTCCGCCGCAGGCTGCTCCGGCTCCAACTCATCATCTTCTCCTC AAACTAATAATAATTCTTCTTCTTCTTCGTCTAGATCTTCAGCTCAGACACTAAGGCCTTTGCTCCCTCGACCCTCCGGCTTCGGTTTCACCCTCTCCCG ATCCTCTAATCATTATAATAATAGTAATATCAACAACCCTAATTTCCTGATGGGGGATAATCATAATACCACGATTTCGTGCTATCCGCCCAACGCCTAC TTCATTCCCCATCACCAGCCAATTATTCCTCATTCTCATCATCATCAGTTTTATCAGAATCCAATGTTGATGAGCCAGCAGCAACACCTTCCCAATCCCA CCGCCACTGCTGCTACGACGTCGTACGAGCATCAAGTCCCCCAGCAACAACAACAGGAGCAACAATATGGACAGCAAGAGGAAGAAGGGCATTGCCAGCT GTACGAGGATATCAATTTGCTGTCGGGGTCCAACGGAAACGATAGTCAGGCGGTTGAGGTTTCGGGTGCGGGTCAGGATCCAGGGTTGCATGCAGATCCC GGAGGAGGGATGTGGGCGTGTGATGAGGAGGATTACTATCCCAACTCTATTTGGGATTACGGAGACCATAATTCATTCTTCGATTTCTGA
AA sequence Show only first row Show all	>Lus10040944 pacid=23179899 polypeptide=Lus10040944 locus=Lus10040944.g ID=Lus10040944.BGIv1.0 annot-version=v1.0 MDVDDNNPPNPNTNTSSPPSSPHYNNSPSLPNSPSSSAAGSKKGKLSGKGGPDNAKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFSTAEDAARAYDR AALILYGSRAQLNLQPSAASAAGCSGSNSSSSPQTNNNSSSSSSRSSAQTLRPLLPRPSGFGFTLSRSSNHYNNSNINNPNFLMGDNHNTTISCYPPNAY FIPHHQPIIPHSHHHQFYQNPMLMSQQQHLPNPTATAATTSYEHQVPQQQQQEQQYGQQEEEGHCQLYEDINLLSGSNGNDSQAVEVSGAGQDPGLHADP GGGMWACDEEDYYPNSIWDYGDHNSFFDF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40220	AP2_ERF	ATABI4, GIN6, S...	SUCROSE UNCOUPLED 6, SUGAR-INS...		Lus10040944 [exp]	0	1
AT3G46570			Glycosyl hydrolase superfamily...		Lus10032039 [exp]	2.6	0.8333
					Lus10011712 [exp]	3.9	0.7606
AT3G03000			EF hand calcium-binding protei...		Lus10004610 [exp]	24.5	0.6927
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10004582 [exp]	25.7	0.7048
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10032038 [exp]	29.6	0.7575
AT4G11290			Peroxidase superfamily protein...		Lus10028688 [exp]	35.0	0.7516
AT3G50330	bHLH	HEC2, bHLH037	HECATE 2, basic helix-loop-hel...		Lus10042647 [exp]	35.5	0.7600
AT5G36930			Disease resistance protein (TI...		Lus10005827 [exp]	46.5	0.6506
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10004988 [exp]	51.3	0.6702
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10010029 [exp]	52.0	0.7123

Compare expression of checked genes

Lus10040944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.