Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38300 141 / 9e-39 GARP myb-like HTH transcriptional regulator family protein (.1) AT2G40260 140 / 5e-38 GARP Homeodomain-like superfamily protein (.1) AT2G42660 117 / 9e-31 GARP Homeodomain-like superfamily protein (.1) AT2G02060 108 / 3e-27 GARP Homeodomain-like superfamily protein (.1) AT1G14600 102 / 3e-25 GARP Homeodomain-like superfamily protein (.1) AT4G04580 86 / 5e-20 GARP Homeodomain-like superfamily protein (.1) AT5G42630 87 / 8e-20 GARP KAN4, KANADI4, ATS KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2) AT5G16560 87 / 1e-18 GARP KAN1, KAN KANADI 1, KANADI, Homeodomain-like superfamily protein (.1) AT1G32240 86 / 1e-18 GARP KAN2, KANADI2 KANADI 2, Homeodomain-like superfamily protein (.1) AT4G17695 85 / 3e-18 GARP KAN3, KANADI3 KANADI 3, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017442 [exp] 140 / 1e-38 AT2G38300 148 / 3e-41 myb-like HTH transcriptional regulator family protein (.1) Lus10007513 [exp] 138 / 6e-38 AT2G40260 145 / 3e-40 Homeodomain-like superfamily protein (.1) Lus10002207 [exp] 128 / 3e-34 AT2G38300 171 / 9e-51 myb-like HTH transcriptional regulator family protein (.1) Lus10012239 [exp] 126 / 2e-33 AT2G38300 170 / 3e-50 myb-like HTH transcriptional regulator family protein (.1) Lus10001149 [exp] 113 / 1e-28 AT2G40260 119 / 1e-30 Homeodomain-like superfamily protein (.1) Lus10029225 [exp] 102 / 1e-25 AT2G38300 110 / 5e-30 myb-like HTH transcriptional regulator family protein (.1) Lus10007279 [exp] 97 / 6e-24 AT2G38300 107 / 1e-28 myb-like HTH transcriptional regulator family protein (.1) Lus10035093 [exp] 95 / 2e-21 AT1G14600 103 / 1e-25 Homeodomain-like superfamily protein (.1) Lus10032746 [exp] 87 / 6e-19 AT5G42630 194 / 3e-60 KANADI 4, ABERRANT TESTA SHAPE, Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185700 [exp] 172 / 3e-50 AT2G40260 188 / 5e-56 Homeodomain-like superfamily protein (.1) Potri.016G121800 [exp] 147 / 6e-41 AT2G38300 183 / 1e-54 myb-like HTH transcriptional regulator family protein (.1) Potri.008G071700 [exp] 146 / 1e-40 AT2G40260 166 / 2e-47 Homeodomain-like superfamily protein (.1) Potri.009G075100 [exp] 125 / 6e-33 AT2G38300 162 / 4e-47 myb-like HTH transcriptional regulator family protein (.1) Potri.004G057900 [exp] 124 / 6e-32 AT2G38300 139 / 7e-38 myb-like HTH transcriptional regulator family protein (.1) Potri.001G280000 [exp] 123 / 7e-32 AT2G38300 140 / 2e-38 myb-like HTH transcriptional regulator family protein (.1) Potri.004G010000 [exp] 117 / 2e-30 AT2G02060 120 / 3e-32 Homeodomain-like superfamily protein (.1) Potri.008G142000 [exp] 117 / 4e-30 AT1G14600 130 / 2e-36 Homeodomain-like superfamily protein (.1) Potri.010G099600 [exp] 114 / 2e-29 AT1G14600 126 / 9e-35 Homeodomain-like superfamily protein (.1) Potri.011G006350 [exp] 112 / 1e-28 AT2G02060 115 / 8e-31 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10040945 pacid=23179692 polypeptide=Lus10040945 locus=Lus10040945.g ID=Lus10040945.BGIv1.0 annot-version=v1.0 ATGGGAAGTAGTAGTCGTCATCCTGATGGCAACTCATCAAAGTCAAGCTTTTTATCCAACACCGACGCGTTTACTAGCGAGGATGAACAAGAAGAAGAGG AAGATGAAGAAGGAGAAGCAGGGTCTGATTGTGACGTCATCAGCACCAACAGCTCCGTTGATGATGAAGAGAAGAAGAAGGCGGCGGCGGGTAATTCGTC CGGCGGATGTGTGCGGAAGTATAACAGGTCAAAGATGCCAAGGCTACGGTGGACCCCGGATCTTCATCTCTGCTTCATCAATGCTGTTGATACACTCGGC GGCCAAGACAGAGCAACACCAAAATTGGTCCTTGAGTTGATGAACATCAAAGGACTCAGCATAGCTCATGTCAAAAGCCACCTTCAGATGTACAGAAGTA AGAAGCTTGACGATCCAGATCAAGGGCAGCATCAAGGGCTTCTACTCCAAGGAAAGGATACCCATGTTTATAACCTAAGCCAACTTCCTATGCTTCGGAC CTTTAACCAAACCACTTCCTCAACTCCTTTCAGATATGGAGATGGAAATGGGAGATCAGGGCACCAAATGTACGGCAAACACTACATCGGAGAAGGAGGA GGAGGAGGAGGAGTCAACAGAAGCAAGCAAGGTAGCCCTTATTATGGTTACAAGCAAAACCCATTTGGAACATCGTCATCCCAAGTTTCCATTCACCGGC TTACTCATCATCATCTACTTCAAGTAAGCAGCAAGTTGTTATCTCGACCGTCATGGCCAGCCCAAATCACCAAACCCATAACCACCACCATGGAATCTAC CAAAACCTTTGGGAATCATAATAACAACGACGGAATACTCAAACGGAAAACAAGGGAACCAGACGACGACGATCATCTCAATGACTTGGATTTGAACCTC TCTCTCAAAGTGAAAGCGGCAAAGATTGTTGATGAGGAAGCTGCTGCTGCTCCAACAAGTAGAATCCTGCAAAAGGAAGTTGATCAGGGGAGTACTACTA CTAGCTTGTCTCTTTCGCTATCTTCATCTTCCAAGTGTACTAGGATGGCGGCAAGTACTCTAGATCTCACTTTGTGA
AA sequence Show only first row Show all	>Lus10040945 pacid=23179692 polypeptide=Lus10040945 locus=Lus10040945.g ID=Lus10040945.BGIv1.0 annot-version=v1.0 MGSSSRHPDGNSSKSSFLSNTDAFTSEDEQEEEEDEEGEAGSDCDVISTNSSVDDEEKKKAAAGNSSGGCVRKYNRSKMPRLRWTPDLHLCFINAVDTLG GQDRATPKLVLELMNIKGLSIAHVKSHLQMYRSKKLDDPDQGQHQGLLLQGKDTHVYNLSQLPMLRTFNQTTSSTPFRYGDGNGRSGHQMYGKHYIGEGG GGGGVNRSKQGSPYYGYKQNPFGTSSSQVSIHRLTHHHLLQVSSKLLSRPSWPAQITKPITTTMESTKTFGNHNNNDGILKRKTREPDDDDHLNDLDLNL SLKVKAAKIVDEEAAAAPTSRILQKEVDQGSTTTSLSLSLSSSSKCTRMAASTLDLTL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10040945 [exp]	0	1
AT3G46540			ENTH/VHS family protein (.1)		Lus10040297 [exp]	2.2	0.9723
					Lus10008301 [exp]	2.4	0.9675
					Lus10014873 [exp]	3.7	0.9669
AT5G47900			Protein of unknown function (D...		Lus10010030 [exp]	4.4	0.9566
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036820 [exp]	4.5	0.9722
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	4.6	0.9688
AT2G37050			Leucine-rich repeat protein ki...		Lus10004275 [exp]	6.0	0.9683
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	6.3	0.9660
					Lus10026056 [exp]	6.7	0.9574
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	7.4	0.9676

Compare expression of checked genes

Lus10040945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.