Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05390 802 / 0 LAC12 laccase 12 (.1) AT2G40370 769 / 0 LAC5 laccase 5 (.1) AT2G30210 657 / 0 LAC3 laccase 3 (.1) AT5G07130 645 / 0 LAC13 laccase 13 (.1) AT2G38080 518 / 2e-180 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G01190 514 / 5e-179 LAC10 laccase 10 (.1) AT5G03260 512 / 4e-178 LAC11 laccase 11 (.1) AT2G29130 510 / 6e-177 LAC2, ATLAC2 laccase 2 (.1) AT5G09360 504 / 7e-175 LAC14 laccase 14 (.1) AT5G60020 492 / 1e-169 LAC17, ATLAC17 laccase 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009841 [exp] 958 / 0 AT5G05390 811 / 0.0 laccase 12 (.1) Lus10007532 [exp] 853 / 0 AT2G40370 804 / 0.0 laccase 5 (.1) Lus10017426 [exp] 845 / 0 AT2G40370 805 / 0.0 laccase 5 (.1) Lus10017427 [exp] 761 / 0 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10007531 [exp] 754 / 0 AT2G40370 799 / 0.0 laccase 5 (.1) Lus10042249 [exp] 610 / 0 AT2G30210 696 / 0.0 laccase 3 (.1) Lus10035546 [exp] 549 / 0 AT3G09220 710 / 0.0 laccase 7 (.1) Lus10027747 [exp] 548 / 0 AT3G09220 707 / 0.0 laccase 7 (.1) Lus10002227 [exp] 527 / 0 AT5G03260 926 / 0.0 laccase 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G183600 [exp] 825 / 0 AT2G40370 937 / 0.0 laccase 5 (.1) Potri.008G073700 [exp] 825 / 0 AT2G40370 946 / 0.0 laccase 5 (.1) Potri.010G183500 [exp] 824 / 0 AT5G05390 915 / 0.0 laccase 12 (.1) Potri.008G073800 [exp] 820 / 0 AT5G05390 893 / 0.0 laccase 12 (.1) Potri.013G152700 [exp] 672 / 0 AT2G30210 916 / 0.0 laccase 3 (.1) Potri.019G124300 [exp] 656 / 0 AT2G30210 845 / 0.0 laccase 3 (.1) Potri.006G094100 [exp] 550 / 0 AT3G09220 691 / 0.0 laccase 7 (.1) Potri.004G156400 [exp] 537 / 0 AT5G03260 877 / 0.0 laccase 11 (.1) Potri.006G097000 [exp] 536 / 0 AT2G38080 914 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Potri.006G097100 [exp] 533 / 0 AT2G38080 896 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10040957 pacid=23179973 polypeptide=Lus10040957 locus=Lus10040957.g ID=Lus10040957.BGIv1.0 annot-version=v1.0 ATGGAGCCTCTCAGCCATCCACCATCCTTCATCTTCTTCTTCTTCCTCGTCTTCTTGCTTGGCCTTGCTTCTGCATGGTCCGCCGATGATGCCAAGACTC ATGTCCATCAGCATGGAGTGAGGCAAATGAGAACAGGGTGGTCGGATGGACCAGAGTATGTTACACAGTGTCCAATTCAGCCAGGAGGTAATTACACTTA CCGATTCACGGTTCGTGAACAAGAAGGAACATTATGGTGGCACGCTCACAGCTCATGGCTCAGGGCCACGGTATATGGGGCTCTTATTATCCACCCCAAA GATGGTGTTTCTTTCCCCTTCCCTAAGCCCGCTCGTCAATCCACTCTCATGCTCGGTGAATGGTGGAACGCGAATCCGATTGATGTAGTAAGGGAAGCAA CCCGAACTGGGGCGGCTCCAAATATTTCAGATGCTTACACCATCAATGGTCAACCTGGAGATCTCTACAACTGTTCTAGTCGAGATACAGTGGTTGTCCC CATCGCCGCCGGCGAGACCAATCTTCTCCGAGTCATTAATTCCGCGATGAACCAGCCGCTGTTCTTCACAATCGCCAACCACAATTTCACCGTCGTCGGA GCAGACGCCTCCTATGTGAAACCCTTCACCACATCGGTGATGATGCTCGGACCAGGCCAGACCACCGACGCACTCATCTCCGGTGACCAAACCCCCGGTA GGTACTACATGGCTGCACGCGCCTACCAAAGTGCACAAAACGCGACTTTCGACACCACGACCACCACCGCAATCCTCCAGTACAACAATTCCTCAAATGC TTCCAAACCAATCATGCCACGTCTACCGGCCTTCAACGACACCCCAACCGTCACGGCATTCAGCGCCAGCTTCAAGAGCAAGGAAAAAGCACTCGTCCCC AAAGAAATCGACGAGAATTTGTTCTTCACAGTTGGATTGGGGCTAAATACCTGCCCGCCGAATTTCAACGCTAGTGAAAGATGCCAGGGGCCTAATGGGA CAAGGTTCACAGCTAGTATGAACAATGTCTCCTTTGTGCTTCCGTCGAATTTTTCCTTATTGGAGGCTTATAAGCTTAATGTTGGAGGAGTTTTCACCTC CGATTTCCCGGCTAGGCCTCCCAAAGCATTCGATTACACCGGAAATGTAAGCCGGTCGTTGTGGCAGCCGATGAGCGGGACGAGACTGTACAAACTTAAA TACGGGTCGAGGGTACAGGTGGTGCTTCAGGGGACGAGTATTGTGACTCCGGAGAACCATCCGATTCATCTCCATGGATACGATTTCTACATTTTAGCTG AAGGGTTTGGCAATTTCGATCCCAAGACTGATACTTCCAAATTCAACCTTGTTGATCCGCCTCTGAGGAACACAGCTGGTGTCCCTGTGAATGGATGGTC AGTTATCCGATTCGTGGCGGATAATCCAGGCGTGTGGCTGATGCATTGCCATTTGGATGTTCATATCACATGGGGACTAGCCATGGCTTTCTTGGTGGAG GATGGAGTTGGGAAATTGGAAGCCATTGAGCCTCCTCCCGAAGATCTTCCAATCTGCTGA
AA sequence Show only first row Show all	>Lus10040957 pacid=23179973 polypeptide=Lus10040957 locus=Lus10040957.g ID=Lus10040957.BGIv1.0 annot-version=v1.0 MEPLSHPPSFIFFFFLVFLLGLASAWSADDAKTHVHQHGVRQMRTGWSDGPEYVTQCPIQPGGNYTYRFTVREQEGTLWWHAHSSWLRATVYGALIIHPK DGVSFPFPKPARQSTLMLGEWWNANPIDVVREATRTGAAPNISDAYTINGQPGDLYNCSSRDTVVVPIAAGETNLLRVINSAMNQPLFFTIANHNFTVVG ADASYVKPFTTSVMMLGPGQTTDALISGDQTPGRYYMAARAYQSAQNATFDTTTTTAILQYNNSSNASKPIMPRLPAFNDTPTVTAFSASFKSKEKALVP KEIDENLFFTVGLGLNTCPPNFNASERCQGPNGTRFTASMNNVSFVLPSNFSLLEAYKLNVGGVFTSDFPARPPKAFDYTGNVSRSLWQPMSGTRLYKLK YGSRVQVVLQGTSIVTPENHPIHLHGYDFYILAEGFGNFDPKTDTSKFNLVDPPLRNTAGVPVNGWSVIRFVADNPGVWLMHCHLDVHITWGLAMAFLVE DGVGKLEAIEPPPEDLPIC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05390		LAC12	laccase 12 (.1)		Lus10040957 [exp]	0	1
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10034246 [exp]	2.0	0.8946
					Lus10021453 [exp]	5.7	0.8330
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Lus10014079 [exp]	6.6	0.6722
					Lus10015310 [exp]	6.9	0.8232
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10034247 [exp]	7.2	0.8207
AT1G08590			Leucine-rich receptor-like pro...		Lus10002754 [exp]	9.5	0.7710
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10003263 [exp]	11.2	0.6733
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038525 [exp]	11.5	0.7501
AT5G19730			Pectin lyase-like superfamily ...		Lus10034981 [exp]	11.6	0.8043
AT1G59970			Matrixin family protein (.1)		Lus10041294 [exp]	13.2	0.6627

Compare expression of checked genes

Lus10040957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.