Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19553 655 / 0 Amino acid permease family protein (.1) AT1G31830 490 / 6e-171 Amino acid permease family protein (.1.2) AT5G05630 488 / 8e-170 Amino acid permease family protein (.1) AT1G31820 435 / 2e-149 Amino acid permease family protein (.1) AT3G13620 355 / 3e-118 Amino acid permease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009849 [exp] 874 / 0 AT3G19553 693 / 0.0 Amino acid permease family protein (.1) Lus10012153 [exp] 494 / 2e-172 AT1G31830 744 / 0.0 Amino acid permease family protein (.1.2) Lus10007593 [exp] 493 / 2e-168 AT1G31830 743 / 0.0 Amino acid permease family protein (.1.2) Lus10003232 [exp] 478 / 4e-166 AT1G31830 687 / 0.0 Amino acid permease family protein (.1.2) Lus10039180 [exp] 366 / 2e-122 AT3G13620 711 / 0.0 Amino acid permease family protein (.1) Lus10034046 [exp] 332 / 5e-109 AT3G13620 641 / 0.0 Amino acid permease family protein (.1) Lus10010512 [exp] 330 / 2e-108 AT3G13620 643 / 0.0 Amino acid permease family protein (.1) Lus10040142 [exp] 45 / 0.0002 AT5G04770 547 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10000962 [exp] 45 / 0.0002 AT5G04770 543 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G296100 [exp] 706 / 0 AT3G19553 678 / 0.0 Amino acid permease family protein (.1) Potri.009G090300 [exp] 697 / 0 AT3G19553 673 / 0.0 Amino acid permease family protein (.1) Potri.004G178000 [exp] 490 / 2e-171 AT1G31830 637 / 0.0 Amino acid permease family protein (.1.2) Potri.003G103600 [exp] 476 / 3e-165 AT1G31830 694 / 0.0 Amino acid permease family protein (.1.2) Potri.001G007200 [exp] 374 / 1e-125 AT3G13620 567 / 0.0 Amino acid permease family protein (.1) Potri.001G007300 [exp] 363 / 2e-121 AT3G13620 675 / 0.0 Amino acid permease family protein (.1) Potri.001G150700 [exp] 49 / 5e-06 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.003G083700 [exp] 42 / 0.0006 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10040966 pacid=23179987 polypeptide=Lus10040966 locus=Lus10040966.g ID=Lus10040966.BGIv1.0 annot-version=v1.0 ATGGGTGAGGAGGGAATCTCGAGTGATGTTGAAGGCGAACCAACTACTACAACTAATTCAAGGCCGAAACTGACGGTATTGCCGCTAATCGCTCTAATAT TCTACGAGGTTTCCGGCGGTCCATTTGGGATTGAAGATTCGGTAAAAGCAGGAGGAGGTCCTTTACTAGCTCTGCTTGGATTCTTGATCTTCCCTCTCAT TTGGAGTATCCCTGAAGCACTGATCACAGCGGAGCTAGCGACAAGTTTCCCTGAGAATGGAGGATATGTCATTTGGATCTCTTCTGCCTTTGGTCCATTT TGGGGTTTCCAAGAAGGGTTTTGGAAATGGTTTAGTGGGGTTATGGATAATGCTCTTTACCCTGTGTTATTCCTTGATTACTTGAAGCATTCTTTCCCTA TTTTCAATCACTTGGCTGCTCGGATCCCTGCTCTTTTAGGGATCACAGGTTCATTGACATACTTGAACTACAGGGGACTCCACATTGTTGGCTTCTCAGC AGTTTCACTCGCTGCTTTCTCCTTGCTCCCATTCGTCGTAATGGCTATCCTTTCCATCCCTAAAATTCGGCCTAGACAGTGGCTTGCTGTTGATTTTGGC ATGGTGGACTGGAGGGGTTACTTCAACACAATGTTTTGGAATCTCAATTACTGGGATAAGGCTAGTACACTTGCTGGTGAGGTTGAGAACCCGAGTAAGA CATTCCCAAAGGCGCTGTTTGGGGCCGTGATTCTGGTGATGGGTTCGTATTTGATCCCTCTATTGGTTGGCACCGGTGCTCTAATGACTCCGTTTAGCAA GTGGAGTGATGGCTACTTTGCTGAAGTTGGATTCTTGATTGGAGGAGCCTGGCTCAGATGGTGGATCCAAGCTGCCGCAGCTATGTCTAATATGGGGCTG TTCGAGGCAGAAATGAGCGCTGATGCGTACCAACTTCTCGGCATGAGTGAGATTGGAATGCTTCCTTCTCTATTTGGTTCGAGGTCGAAACATGGTACCC CCACGATCAGCATCCTATTCTCGGCTGCTGGGGTGATCTTCTTGTCATGGATGAGCTTCCAGGAGATTTTGGAGTTTCTCAACTTCTTGTACGCAATGGG GATGCTGTTGGAATTTGCAGCGTTCATCAAGCTGAGAATCAAGAAGCCTGATCTGCACAGGCCGTACAGGGTTCCTCTAGAGACTTTTGGGGCAATACTT CTATGCCTCCCACCTACGGTTTTGCTTGTTCTGGTAATGTGTTTGGCTAGTTTGAGGACATTCCTGATAAGTGGAGCTGTTATAGCTGTGGGGTTTTTTA TTTATCCAACTTTACTTCTTGCCAAGAGCCAGAAATGGATCGACTTCCATACTCAAGAACCTGTAGACGTTCCTAATGAAGTTGACGATGGAGAAGTTGT AGATGAGTCTGCAGTCGGTCTGCTGGCTGATCTGTCATGTGTGAAGACGGATTGA
AA sequence Show only first row Show all	>Lus10040966 pacid=23179987 polypeptide=Lus10040966 locus=Lus10040966.g ID=Lus10040966.BGIv1.0 annot-version=v1.0 MGEEGISSDVEGEPTTTTNSRPKLTVLPLIALIFYEVSGGPFGIEDSVKAGGGPLLALLGFLIFPLIWSIPEALITAELATSFPENGGYVIWISSAFGPF WGFQEGFWKWFSGVMDNALYPVLFLDYLKHSFPIFNHLAARIPALLGITGSLTYLNYRGLHIVGFSAVSLAAFSLLPFVVMAILSIPKIRPRQWLAVDFG MVDWRGYFNTMFWNLNYWDKASTLAGEVENPSKTFPKALFGAVILVMGSYLIPLLVGTGALMTPFSKWSDGYFAEVGFLIGGAWLRWWIQAAAAMSNMGL FEAEMSADAYQLLGMSEIGMLPSLFGSRSKHGTPTISILFSAAGVIFLSWMSFQEILEFLNFLYAMGMLLEFAAFIKLRIKKPDLHRPYRVPLETFGAIL LCLPPTVLLVLVMCLASLRTFLISGAVIAVGFFIYPTLLLAKSQKWIDFHTQEPVDVPNEVDDGEVVDESAVGLLADLSCVKTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19553			Amino acid permease family pro...		Lus10040966 [exp]	0	1
AT3G19553			Amino acid permease family pro...		Lus10009849 [exp]	1.0	0.8915
AT5G08139			RING/U-box superfamily protein...		Lus10023235 [exp]	2.4	0.8711
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10011546 [exp]	4.2	0.8744
AT5G53140			Protein phosphatase 2C family ...		Lus10019012 [exp]	5.9	0.8593
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10032285 [exp]	6.2	0.8124
AT5G67580	MYB	ATTBP3, TRB2, A...	TELOMERE-BINDING PROTEIN 3, TE...		Lus10019260 [exp]	6.5	0.8563
AT4G25672		CPuORF12	conserved peptide upstream ope...		Lus10027512 [exp]	6.9	0.8692
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10031560 [exp]	7.1	0.8382
AT4G25670			unknown protein		Lus10038842 [exp]	7.3	0.8410
AT5G25050			Major facilitator superfamily ...		Lus10026893 [exp]	7.3	0.7651

Compare expression of checked genes

Lus10040966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.