Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19740 412 / 1e-131 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 391 / 1e-123 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G02890 247 / 9e-70 AAA-type ATPase family protein (.1.2) AT4G02480 247 / 9e-70 AAA-type ATPase family protein (.1) AT4G24860 230 / 5e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G64110 221 / 4e-62 DAA1 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT5G52882 218 / 8e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G28000 217 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G53540 190 / 7e-54 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G27680 189 / 1e-53 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010204 [exp] 500 / 3e-165 AT3G19740 1242 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017405 [exp] 499 / 7e-165 AT3G19740 1223 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013429 [exp] 353 / 4e-108 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036347 [exp] 247 / 1e-69 AT4G02480 1395 / 0.0 AAA-type ATPase family protein (.1) Lus10010282 [exp] 244 / 9e-69 AT4G02480 1408 / 0.0 AAA-type ATPase family protein (.1) Lus10027551 [exp] 224 / 9e-63 AT5G52882 1136 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10039309 [exp] 224 / 1e-62 AT5G52882 1140 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017535 [exp] 221 / 6e-62 AT1G64110 1157 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Lus10024692 [exp] 221 / 1e-61 AT1G64110 1176 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G093300 [exp] 475 / 1e-155 AT3G19740 1209 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G069800 [exp] 454 / 2e-147 AT1G50140 1215 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.014G131000 [exp] 250 / 7e-71 AT1G02890 1432 / 0.0 AAA-type ATPase family protein (.1.2) Potri.015G094100 [exp] 250 / 7e-71 AT4G02480 1128 / 0.0 AAA-type ATPase family protein (.1) Potri.012G096300 [exp] 249 / 2e-70 AT4G02480 1153 / 0.0 AAA-type ATPase family protein (.1) Potri.002G205900 [exp] 249 / 2e-70 AT1G02890 1445 / 0.0 AAA-type ATPase family protein (.1.2) Potri.001G097600 [exp] 226 / 8e-64 AT1G64110 1159 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.012G035400 [exp] 223 / 2e-62 AT5G52882 1137 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G133700 [exp] 222 / 3e-62 AT1G64110 1145 / 0.0 DUO1-activated ATPase 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.015G026900 [exp] 221 / 6e-62 AT5G52882 1146 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10040976 pacid=23179758 polypeptide=Lus10040976 locus=Lus10040976.g ID=Lus10040976.BGIv1.0 annot-version=v1.0 ATGCGAAGGGTTGTTCCGTGGGAGAAAATCCATGCTTCTTGGGAAACATTTCCATACTACATCAATGAAAATTCCAGAAGTGTTTTATTGGAATGTGTTA CTTCCCACTTGAAGCATACAGATTGTTCAGCTTCATACGGGGCTCGTTTGATGTCTTCAAGTGGCAGAATACTGCTTCAGGGCACTCCAGGAACTGAGCT TTATCGGGAAAGACTTGTAAGAGCACTTGCAAGGAAGATGCAAGTTCCTCTGCTAGTTCTTGATAGCAGTGTTCTTGCTCCTTATGATATTGAAGATTGC TCATCAGAGTCTGAGTCGGATGATGCTGCAGAATCGGGGGACGAGTGTACATCAGAGTCTGAGGCTGATGAAGAGAATGAAGCAGTTAATGAAGAGGAGT GGACAAGCAGTGCCGAGGGAAAATCAGATGGTAGTGAAGATGAAACAGCTGATGTGGCAGCAACTGCCGAGGCGGCCCTCAGGAAGTTAATTCCCTACCA TGTAGAAGACTTTGAAAAGCAAGTCTCTGGAGAATCAGAAGCCTCTTCAGGAATGTCAAAGTCTGGAAATGCTGAGCCTTCAGATAATTCCCAAAGGCCT CTTAAGAAAGGTGATCGGGTGAAGTACGTAGGCAGTTCCAAATCTGTTGAAGCTGGTAACAGGCTCTTGTCAAATGGTCAACGTGGCGAGGTATATGAGG TCACTGGAAATCAAGTTGCTGTGATCTGGGATATTGCGAATGATGGCCAAACAAATGAAGGAGACATACATGAGAAACAAGATGACCTTTCTGGAAAGGC ATCTGATATTGAGCATGACCCGGATGCGGAGGCTGATGACTGTTATATCGCAATGGAGGCATTATATGAGATCATGCGTACCATGCAGCCTCTCATAGTA TACTTCCCGGACTTTTCTGTGTGGTTGTCTAGGGCGGTACCCAAGTCAAACCGTCACGAGTTTCTCCACAAGATGCAGGAAACGCTTGACCAACTTTCTG GTCCTGTTGTCTTGATAAGTGGCCAAAACAAAGTCGAGGCTGGATCAGGGTCAAAGGACAAAGGGAAATTTACAATGATCCTTCCAAATTTTGGTAGACT GGCTAAGCTGCCTCCTACTTTGAAGAACCTAACTGAAGGTCCCAGAGGGACTAAAAGATCTACCTTCAATGAAACCAGAAAGGTTTTTACTAATGTTTTG CTCATGGACCCCCCTGAGGAAGAAGATCTTCTTAGGACATTCAACAAACAGATTGAGGAGGATAGGAAAATTGTAATATCAAGGAGCAATTTCAATGAAC TTCATAAGAACTTGGCAAAGGATGAATATGAGAGCAACTTTGTTTCGGCTGTGGTACCTCCTGGAGAGATTGGTGTCAGATTCAATGATGTAGGAGCTCT TGAGCATGTGAAGAAGGCCTTGAATGAACTAGTAATTCTCCCCATGAGCAGACCGGAGCTTTTCTCACATGGAAATCTGTTGAGGCCTTGCAAAGGAATA TTGCTCTTTGGACCTCCTGGAACTGGGAAGACTCTTTTGGCTAAAGCACTTGCCACAGAAGCAGGGGCCAACTTTATCAACATAACAGGTTCAACTCTTA CATCAAAGTGGTTTGGAGATGCTGAAAAGTTGACAAAGGCCCTTTTCTCCTTTGCCAGCAAGCTGGCTCCTGTTATCATATTTGTTGATGAGGTTGACAG TTTGCTAGGTGCTCGCGGGGGCGCTTCTGAGCATGAAGGTACAAGAAGAATGAGAAATGAATTCATGGCTGCATGGGATGGATTAAGATCCAAAGACAGT CAGAGGATCCTCGTCCTTGGTGCTACAAATCGACCGTTCGATCTTGATGATGCGGTGATTCGTCGTTTACCTAGGAGGCAAGGCATTTATTCTTCTACCT TTATGGATATGAGTTTAGCAGCCTTACTGAGTTGTGCAGTATTTGCTATTCAGGATATATGTGGACTTGCCGGATGCCGAGAATCGTATGAAGATTCTAA AAATAATTCTTGGAAATGA
AA sequence Show only first row Show all	>Lus10040976 pacid=23179758 polypeptide=Lus10040976 locus=Lus10040976.g ID=Lus10040976.BGIv1.0 annot-version=v1.0 MRRVVPWEKIHASWETFPYYINENSRSVLLECVTSHLKHTDCSASYGARLMSSSGRILLQGTPGTELYRERLVRALARKMQVPLLVLDSSVLAPYDIEDC SSESESDDAAESGDECTSESEADEENEAVNEEEWTSSAEGKSDGSEDETADVAATAEAALRKLIPYHVEDFEKQVSGESEASSGMSKSGNAEPSDNSQRP LKKGDRVKYVGSSKSVEAGNRLLSNGQRGEVYEVTGNQVAVIWDIANDGQTNEGDIHEKQDDLSGKASDIEHDPDAEADDCYIAMEALYEIMRTMQPLIV YFPDFSVWLSRAVPKSNRHEFLHKMQETLDQLSGPVVLISGQNKVEAGSGSKDKGKFTMILPNFGRLAKLPPTLKNLTEGPRGTKRSTFNETRKVFTNVL LMDPPEEEDLLRTFNKQIEEDRKIVISRSNFNELHKNLAKDEYESNFVSAVVPPGEIGVRFNDVGALEHVKKALNELVILPMSRPELFSHGNLLRPCKGI LLFGPPGTGKTLLAKALATEAGANFINITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGASEHEGTRRMRNEFMAAWDGLRSKDS QRILVLGATNRPFDLDDAVIRRLPRRQGIYSSTFMDMSLAALLSCAVFAIQDICGLAGCRESYEDSKNNSWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19740			P-loop containing nucleoside t...		Lus10040976 [exp]	0	1
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Lus10025853 [exp]	3.5	0.9235
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10019207 [exp]	4.7	0.9219
AT4G30150			unknown protein		Lus10007572 [exp]	7.7	0.9141
AT4G17610			tRNA/rRNA methyltransferase (S...		Lus10001005 [exp]	8.4	0.8850
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10042248 [exp]	8.9	0.9069
AT1G27595			unknown protein		Lus10007230 [exp]	9.2	0.9137
AT1G16480			Tetratricopeptide repeat (TPR)...		Lus10017082 [exp]	9.8	0.8937
AT5G51540			Zincin-like metalloproteases f...		Lus10031136 [exp]	10.5	0.8631
AT5G14520			pescadillo-related (.1)		Lus10000357 [exp]	11.0	0.9068
AT5G66631			Tetratricopeptide repeat (TPR)...		Lus10016792 [exp]	11.6	0.8701

Compare expression of checked genes

Lus10040976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.