Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08520 277 / 1e-92 MYB Duplicated homeodomain-like superfamily protein (.1) AT1G49010 209 / 4e-66 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G23650 184 / 4e-56 MYB Homeodomain-like transcriptional regulator (.1) AT5G58900 170 / 3e-51 MYB Homeodomain-like transcriptional regulator (.1) AT2G38090 168 / 3e-50 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G04760 163 / 2e-49 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G05790 164 / 8e-49 MYB Duplicated homeodomain-like superfamily protein (.1) AT3G11280 159 / 3e-47 MYB Duplicated homeodomain-like superfamily protein (.1.2) AT5G01200 145 / 1e-41 MYB Duplicated homeodomain-like superfamily protein (.1) AT3G10580 121 / 1e-32 MYB Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013447 [exp] 424 / 2e-150 AT5G08520 350 / 2e-121 Duplicated homeodomain-like superfamily protein (.1) Lus10040696 [exp] 177 / 2e-53 AT5G58900 306 / 2e-104 Homeodomain-like transcriptional regulator (.1) Lus10018209 [exp] 176 / 4e-53 AT5G58900 302 / 9e-103 Homeodomain-like transcriptional regulator (.1) Lus10035518 [exp] 166 / 1e-49 AT2G38090 304 / 1e-103 Duplicated homeodomain-like superfamily protein (.1) Lus10014837 [exp] 165 / 2e-49 AT3G11280 242 / 7e-80 Duplicated homeodomain-like superfamily protein (.1.2) Lus10041088 [exp] 157 / 6e-47 AT5G04760 233 / 1e-77 Duplicated homeodomain-like superfamily protein (.1) Lus10036413 [exp] 157 / 1e-46 AT5G04760 234 / 3e-78 Duplicated homeodomain-like superfamily protein (.1) Lus10009884 [exp] 157 / 4e-46 AT3G11280 246 / 4e-81 Duplicated homeodomain-like superfamily protein (.1.2) Lus10028264 [exp] 156 / 7e-46 AT3G11280 221 / 1e-71 Duplicated homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G076200 [exp] 350 / 2e-121 AT5G08520 293 / 6e-99 Duplicated homeodomain-like superfamily protein (.1) Potri.005G087700 [exp] 338 / 4e-117 AT5G08520 304 / 2e-103 Duplicated homeodomain-like superfamily protein (.1) Potri.012G060300 [exp] 225 / 1e-72 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1) Potri.001G248800 [exp] 176 / 2e-53 AT5G58900 312 / 1e-106 Homeodomain-like transcriptional regulator (.1) Potri.009G042600 [exp] 176 / 4e-53 AT5G58900 307 / 1e-104 Homeodomain-like transcriptional regulator (.1) Potri.010G240800 [exp] 172 / 8e-53 AT5G04760 232 / 3e-77 Duplicated homeodomain-like superfamily protein (.1) Potri.001G219100 [exp] 171 / 2e-52 AT5G04760 217 / 2e-71 Duplicated homeodomain-like superfamily protein (.1) Potri.006G097300 [exp] 173 / 4e-52 AT2G38090 355 / 2e-123 Duplicated homeodomain-like superfamily protein (.1) Potri.016G112300 [exp] 171 / 3e-51 AT2G38090 358 / 9e-125 Duplicated homeodomain-like superfamily protein (.1) Potri.010G193000 [exp] 164 / 1e-48 AT2G38090 258 / 2e-85 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10041001 pacid=23180023 polypeptide=Lus10041001 locus=Lus10041001.g ID=Lus10041001.BGIv1.0 annot-version=v1.0 ATGGCTGTGGATGAAGTGGGTAGCAGCTGCTCTTGGACTAGAGAGCAAGATTCAGCGTTCGAAAATGCACTGGCAACTTACCCAGAGGACGATTCAGATC GATGGGAGAAAATTGCTGCAGGCGTGGAGGGGAAGACACTGGAAGAGGTTAAAGACCACTTTGACCTCTTGCTTGAGGACATTGGTCTCATTGAATCTGG GTGTGTTCCTCTACCCAGCTATAATTCGTCTTCCGAGTCTTCCACCAGCCATGGCGGCGACGAAGGTACTGGTAAGAAGGGTGGCCATGGAGGAAACAAC AACAGTGAGTCCAATCAGGGGAATAAGGGTTCAAGGGCAGACCAGGAACGCCGCAAGGGAATTGCTTGGACAGAAGATGAACATAGGTTATTCCTTCTTG GATTGGAGAAATATGGAAAAGGTGACTGGAGAAGTATATCCAGGAATTTTGTGGTGACGAGGACACCTACCCAAGTTGCTAGCCATGCTCAGAAGTATTT CATCCGGTTAAACTCGATGAACAAGGACCGCAGGCGTTCCAGCATTCATGATATCACTAGTCTAAACAATGGGGAGATAGCTGCCGCACAAGGACCAATA ACTGGACAAACAAATGGCGCTTCTGCTGGTGTAGGGGGTTCGGGAAAGTCCGGGAAACAGCCATCTCAACATCCCGGTGGACCTCCAGGGGTGGTGGGGA TCTACGGTGCTCCAACAATAGGACAACCAATTGGAGGTCCATTGGTTTCAGCAGTAGGGACGCCTGTGAATCTAGCTTCACCAGCACACATGGCATATGG AGTGAGAGCCCCAGTTCCAGGAGCAATGGTTCCAGGGGCACCAATGACAATGGGTGGTCCGATGGCATATCCAATGCCCCCGACTACAAGTGCGCATAGG TAA
AA sequence Show only first row Show all	>Lus10041001 pacid=23180023 polypeptide=Lus10041001 locus=Lus10041001.g ID=Lus10041001.BGIv1.0 annot-version=v1.0 MAVDEVGSSCSWTREQDSAFENALATYPEDDSDRWEKIAAGVEGKTLEEVKDHFDLLLEDIGLIESGCVPLPSYNSSSESSTSHGGDEGTGKKGGHGGNN NSESNQGNKGSRADQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSLNNGEIAAAQGPI TGQTNGASAGVGGSGKSGKQPSQHPGGPPGVVGIYGAPTIGQPIGGPLVSAVGTPVNLASPAHMAYGVRAPVPGAMVPGAPMTMGGPMAYPMPPTTSAHR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10041001 [exp]	0	1
AT5G08520	MYB		Duplicated homeodomain-like su...		Lus10013447 [exp]	1.4	0.9242
AT5G62910			RING/U-box superfamily protein...		Lus10004246 [exp]	2.0	0.8583
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10029422 [exp]	3.9	0.8510
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Lus10004219 [exp]	6.3	0.8362
AT5G67220			FMN-linked oxidoreductases sup...		Lus10041598 [exp]	6.9	0.7578
AT3G23080			Polyketide cyclase/dehydrase a...		Lus10000083 [exp]	10.7	0.8178
AT5G48910		LPA66	LOW PSII ACCUMULATION 66, Pent...		Lus10010908 [exp]	16.9	0.8210
AT1G16250			Galactose oxidase/kelch repeat...		Lus10002112 [exp]	17.5	0.7842
AT5G62910			RING/U-box superfamily protein...		Lus10042156 [exp]	18.0	0.7636
AT2G46500		UBDKGAMMA4, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10030251 [exp]	20.5	0.7630

Compare expression of checked genes

Lus10041001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.