Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25140 1401 / 0 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT5G15450 1265 / 0 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT1G74310 768 / 0 HOT1, ATHSP101 heat shock protein 101 (.1) AT3G48870 674 / 0 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT4G14670 504 / 8e-168 CLPB2 casein lytic proteinase B2 (.1) AT5G50920 363 / 3e-110 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT5G51070 320 / 3e-94 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT3G45450 173 / 2e-47 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 63 / 7e-10 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 63 / 7e-10 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030705 [exp] 1241 / 0 AT5G15450 1619 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10013191 [exp] 1221 / 0 AT5G15450 1605 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10021159 [exp] 748 / 0 AT1G74310 1421 / 0.0 heat shock protein 101 (.1) Lus10040528 [exp] 712 / 0 AT1G74310 1496 / 0.0 heat shock protein 101 (.1) Lus10013459 [exp] 692 / 0 AT4G31890 703 / 0.0 ARM repeat superfamily protein (.1.2) Lus10036017 [exp] 640 / 0 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 639 / 0 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032544 [exp] 638 / 0 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10040527 [exp] 422 / 5e-137 AT1G74310 906 / 0.0 heat shock protein 101 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G262700 [exp] 1469 / 0 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.017G090600 [exp] 1259 / 0 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.004G124800 [exp] 1246 / 0 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.015G056900 [exp] 785 / 0 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.015G057000 [exp] 780 / 0 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.012G105900 [exp] 369 / 1e-112 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 368 / 4e-112 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G110000 [exp] 323 / 1e-95 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.005G197400 [exp] 311 / 1e-95 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G112000 [exp] 323 / 2e-95 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [flax] [poplar] Clp_N Clp amino terminal domain, pathogenicity island component CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA) CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10041018 pacid=23179575 polypeptide=Lus10041018 locus=Lus10041018.g ID=Lus10041018.BGIv1.0 annot-version=v1.0 ATGGCCGCCTCGAGGAGGCTCACCAAATCGGCTCTGGCAGCCATTAGAGCATCTGTATTGCGTAATCACTCTTCTTCCTCCTCTTTCCACCTCTCGCGGT ATCGTCCATTCTCCTCCTCTGTGTACCTGCTCGGTAACGCGCCCAACGGTCTGTTCCGGCCTCAGTTGTTTAACGAAAAGAATGGCGTCGTGGTTCCATT CTCCAAACTCTTGTTCCCTCGCAGCTTTCACTCTTCGTCACCTCGCTTCTCTGCCGCCGCCGGTTCTTCACAGGCTAATCAGTCTGAGTTCACTGAGATG GCATGGGAGGGTATCATTGATGCTGTTGATGCAGCACGAAGTAACAAGCAACAAGTTGTGGAAACTGAACATTTAATGAAAGCCTTATTGGAGCAAAAAG ATGGTCTGGCTAGGAGAATATTCACCAAGGCTGGTGTTGATAACTCATCAGTTTTGCAAGCTACAAATGACTTCATAGATAATCAACCAAAGATAATGGG TGATACTAGTGGCCCTATGGTGGGACCAAATCTCTCTGCGCTGCTTGATCTTGCTAGGATGAACAAGAAGGATATGGCGGACGATTTTGTATCAGTTGAG CATTTTGTCTTGGCATTCCCTTCGGACAAACGATTTGGCCAGCAGTTATTTCGAAATATTCAGCTCAGTGAGAAGGATTTGAAAGATGCCATTCAAGCTG TTCGAGGGAGTCAGAGAGTAACTGATCAAAATCCTGAAGGCAAGTATGAAGCATTGGACAAGTATGGGAATGACCTAACTGAACTTGCTAGGCGTGGGAA GCTTGATCCTGTTATTGGTCGGGATGATGAAATTCGGAGATGCATTCAGATTTTATCCAGGAGAACAAAGAACAATCCTGTTATTATTGGCGAACCTGGT GTGGGTAAAACTGCAATTGCAGAAGGCCTGGCCCAAAGGATAGTGCGCGGTGATGTGCCTGAACCGCTAATGAATAGGAAGCTAATATCTCTGGATATGG GCTCACTGGTAGCTGGTGCCAAGTATAGAGGAGATTTTGAGGAGAGGTTGAAAGCTGTTCTGAAGGAAGTTACTTCTTCAAATGGACAGATCATTCTCTT CATTGACGAGATCCATACGGTAGTTGGTGCAGGCGCTACCTCTGGAGCAATGGATGCTGGGAACTTGCTGAAGCCGATGCTTGGGCGAGGCGAGCTCAGA TGCATAGGTGCAACCACATTGAATGAGTACAGGAAATACGTTGAGAAGGATCCTGCGCTGGAACGTAGATTTCAACAGGTATTTTGTGCTCAACCATCTG TCGAAGATACAATATCAATTCTTCGTGGACTGCGCGAGCGCTATGAGTTACACCATGGTGTCAAGATTTCGGACAGTGCACTTGTTGCGGCTGCAGTTCT TGCTGACAGATATATCACCGAGCGTTTTCTCCCCGATAAAGCGATCGATCTCGTCGATGAAGCGGCTGCAAAGCTGAAAATGGAGATAACTTCTAAGCCT ACAGAGTTAGATGAGGTAGATCGAGCTGTCTTGAAGTTGGAGATGGAAAAGCTCTCTGTGAAAAATGACACCGATAAGGCATCAAAAGAGAGATTGAACA AGCTCGAAAACGATCTCAACTTACTGAAACAAAAGCAGAAAGAACTTAACGAACAGTGGGGCCGTGAGAAAGGTCTCATGAATGGGATCCGCTCAGTCAA AGAAGAGATTGATAGAGTCAATTTGGAAATGGAAGCTGCTGAACGGGAGTATGACCTGAATCGTGCTGCAGAGCTAAAGTATGGAACTTTAATGTCCCTT CAACGCCAACTTGAGGAGGCTGAGAAAAATCTGGCCGAGTTCAGGAAGTCGGGAAGTTCCTTGCTCCGTGAAGAGGTTACCGACATTGATATTACTGAGA TCGTTAGCAAATGGACCGGTATACCTCTATCAAACCTCCAACAATCCGAGAGGGAGAAGTTGGTCTTGCTAGAAGAGGTACTCCACAAGAGGGTGATTGG TCAGGACATGGCAGTAAAGTCAGTAGCTCATGCAATCAGACGTTCAAGAGCAGGTTTATCGGATCCAAATCGACCAATTGCCAGCTTCATGTTCATGGGA CCTACTGGCGTTGGCAAGACGGAGCTTGCAAAGGCCCTGGCTTGTTATCTATTCAACACGGAAAATGCACTTGTGAGAATAGATATGTCCGAGTACATGG AGAAGCACGCAGTCTCCCGGTTGGTTGGGGCCCCACCAGGTTACGTTGGTTATGAAGAGGGTGGCCAGCTTACAGAAGTAGTTCGTCGCAGGCCGTACTC GGTAGTACTTTTCGACGAAATCGAGAAAGCACACCATGATGTCTTCAACATCCTGTTACAGTTATTGGATGACGGAAGGATAACAGACTCTCAAGGGAGG ACTGTTAGTTTCACAAACTGTGTTGTGATAATGACCTCCAACATCGGATCTCATTTCATACTGGACACTCTTCGCAACACGAAAGATAGCAAGGAAGTAG TTTATGATATCATGAAACAGCAAGTTGTGGATCTCGCAAGACAGACTTTCCGTCCAGAGTTCATGAACAGGATTGACGAGTATATCGTGTTCCAACCATT GGACTCCACCGAGATCAGTAAAATCGTCGAGATACAGCTTAAGCGGGTGAGGGAAAGGCTGAAGCAAAGGAAGATCGAAGTTAAGTACACAAAGGAAGCG GTGGATGTGTTGGCAGCACTGGGATTCGATCCGAACTTTGGAGCACGACCGGTTAAGAGGGTGATACAGCAGTTGGTGGAGAATGAAATAGCAATGGGAG TGTTGAGAGGGGATTTCAAAGAGGAAGACACTCTGGTTGTGGATTCAGATCCATTGAAGAAGTTGGTTATAAGGAAACTGGAGAGCAGTCCGGAAATGGA AGTCCTCGTTGCAAATGACTAG
AA sequence Show only first row Show all	>Lus10041018 pacid=23179575 polypeptide=Lus10041018 locus=Lus10041018.g ID=Lus10041018.BGIv1.0 annot-version=v1.0 MAASRRLTKSALAAIRASVLRNHSSSSSFHLSRYRPFSSSVYLLGNAPNGLFRPQLFNEKNGVVVPFSKLLFPRSFHSSSPRFSAAAGSSQANQSEFTEM AWEGIIDAVDAARSNKQQVVETEHLMKALLEQKDGLARRIFTKAGVDNSSVLQATNDFIDNQPKIMGDTSGPMVGPNLSALLDLARMNKKDMADDFVSVE HFVLAFPSDKRFGQQLFRNIQLSEKDLKDAIQAVRGSQRVTDQNPEGKYEALDKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPG VGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLVAGAKYRGDFEERLKAVLKEVTSSNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELR CIGATTLNEYRKYVEKDPALERRFQQVFCAQPSVEDTISILRGLRERYELHHGVKISDSALVAAAVLADRYITERFLPDKAIDLVDEAAAKLKMEITSKP TELDEVDRAVLKLEMEKLSVKNDTDKASKERLNKLENDLNLLKQKQKELNEQWGREKGLMNGIRSVKEEIDRVNLEMEAAEREYDLNRAAELKYGTLMSL QRQLEEAEKNLAEFRKSGSSLLREEVTDIDITEIVSKWTGIPLSNLQQSEREKLVLLEEVLHKRVIGQDMAVKSVAHAIRRSRAGLSDPNRPIASFMFMG PTGVGKTELAKALACYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVVRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGR TVSFTNCVVIMTSNIGSHFILDTLRNTKDSKEVVYDIMKQQVVDLARQTFRPEFMNRIDEYIVFQPLDSTEISKIVEIQLKRVRERLKQRKIEVKYTKEA VDVLAALGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFKEEDTLVVDSDPLKKLVIRKLESSPEMEVLVAND

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25140		HSP98.7, CLPB-M...	HEAT SHOCK PROTEIN 98.7, CASEI...		Lus10041018 [exp]	0	1
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10041207 [exp]	2.2	0.9452
AT4G02450			HSP20-like chaperones superfam...		Lus10000340 [exp]	3.2	0.9294
AT4G21320		HSA32	HEAT-STRESS-ASSOCIATED 32, Ald...		Lus10018387 [exp]	4.2	0.9342
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10023423 [exp]	7.7	0.9083
AT1G66080			unknown protein		Lus10010967 [exp]	7.7	0.9183
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Lus10034592 [exp]	8.3	0.9312
AT1G74320			Protein kinase superfamily pro...		Lus10026145 [exp]	8.8	0.9248
AT4G31870		ATGPX7	glutathione peroxidase 7 (.1)		Lus10042418 [exp]	9.4	0.8664
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	9.8	0.9310
AT5G02490		AtHsp70-2	Heat shock protein 70 (Hsp 70)...		Lus10040304 [exp]	11.1	0.8476

Compare expression of checked genes

Lus10041018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.