Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25180 353 / 1e-113 GARP ARR12 response regulator 12 (.1) AT4G31920 305 / 7e-96 GARP ARR10 response regulator 10 (.1) AT5G58080 255 / 5e-76 GARP ARR18 response regulator 18 (.1) AT4G16110 253 / 8e-75 GARP ARR2 response regulator 2 (.1) AT2G01760 238 / 3e-72 GARP ARR14 response regulator 14 (.1) AT1G67710 213 / 2e-61 GARP ARR11 response regulator 11 (.1) AT3G16857 154 / 2e-39 GARP ARR1 response regulator 1 (.1.2) AT5G49240 143 / 4e-38 GARP APRR4 pseudo-response regulator 4 (.1) AT3G62670 127 / 6e-32 GARP ARR20, MEE41 maternal effect embryo arrest 41, response regulator 20 (.1) AT3G46640 102 / 2e-23 GARP PCL1, LUX PHYTOCLOCK 1, LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005340 [exp] 1088 / 0 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10016846 [exp] 280 / 2e-84 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10037719 [exp] 279 / 3e-84 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10006446 [exp] 231 / 4e-69 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10011389 [exp] 224 / 1e-66 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10019058 [exp] 226 / 4e-66 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10036303 [exp] 150 / 2e-38 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10025044 [exp] 124 / 4e-30 AT4G31920 220 / 6e-65 response regulator 10 (.1) Lus10027416 [exp] 123 / 2e-29 AT4G16110 169 / 4e-45 response regulator 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G262100 [exp] 654 / 0 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G021300 [exp] 613 / 0 AT2G25180 364 / 2e-117 response regulator 12 (.1) Potri.018G111300 [exp] 375 / 9e-121 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G188000 [exp] 352 / 3e-112 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.008G135500 [exp] 278 / 4e-84 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G001000 [exp] 276 / 3e-83 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G213500 [exp] 275 / 1e-82 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.010G105600 [exp] 264 / 5e-79 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.010G053100 [exp] 236 / 9e-70 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.008G181000 [exp] 226 / 3e-65 AT1G67710 383 / 5e-127 response regulator 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10041020 pacid=23179662 polypeptide=Lus10041020 locus=Lus10041020.g ID=Lus10041020.BGIv1.0 annot-version=v1.0 ATGATTGTGGAGCAAGGAGGTAGCAGGGACCAGTTCCCCATTGGCATGAGGGTCTTAGCAGTTGACGATGACCTCACTTGCCTCCTTGTTCTTGAAACCC TTCTCCGCAAATGCCAATATCATGTAACCACCACAAGTCAGGCAAGGATGGCATTGACAATGTTGAGAGAAAGGAGGAACGACTTTGACCTTGTGATTAG TGATGTTCATATGCCTGACATGGATGGCTTTCATTTGCTCGAGAAAGTTGGCCTGGAAATGGACCTTCCTGTTATAATGTTATCAGCAAATAGTGATCCA AAGGTTGTGATGAAAGGGATCACACACGGGGCTTGTGATTATTTACTGAAGCCTATTCGGATCGAGGAGCTCAAGAACATCTGGCAGCATGTTGTTAGGA GAAAGAAGACTGATAATAGAGACAAGAACAACTCAGACAACAGGGATAATAAGCCTAATTCTCAAAGTGGTGAAGCAACTTCAGAACAGAAACTTAACAA GAAAAGGAAGGACCAAATCGACGAAGAAGATGAGGACTCTGATGATAATGGAAATGATTATGACGATCCGAGCAGCCAAAAGAAGCCTCGGGTTGTTTGG TCAGTCGAGTTGCATCGCAAATTCGTCTCTGCTGTCAACCACTTGGGCGTCGACAAGGCTGTACCAAAGAAGATTTTGGACCTGATGAATGTTGAAAAGC TTACAAGAGAAAATGTGGCAAGTCATCTTCAAAAATACAGGCTTTACCTTAAAAGGATTAGTACTGTGGCGAACCAGCAAGCTAATATGGCAGCAGCTCT GGTAGGCTCTGATGCTTCATATTTACAAATGGGTCCTTTGACTGGGCTTGGGCTGCACAATGTTGCTGGAAATGGACAGTTTCAGAATGGAGGTTTCAGA TCAGTAACTCCTAATGGCATGCTCGGCCGGTTGAATTCTCCAGCCGGTATGAGCTTTCATGGTCTTCCTTCTCCTGGAATGATGCAAGTAGCCCATGTAC AAACTGGTGGCCACTTGACCAGTCAGAATCAATTCCAGTCGGTTATAAGTAATGCAAATGTTCTACAAGGCATGCCGGTTTCATTAGAACTTGATCAAAT ACAACCTAACAAGGGGATTAACTACATGAGAGAGATTCCTACTGCTATCGAAAGTACATCTGGTTTCGCTGACACGAGTATGGCTGTTGGCAGTTCAAAT GATTCCTTTGTTGGGGCTTCCTCAGACAAGTCCTTGTTTCTAGACAGGCGGCGACTCCAAGGGACCCAACCGGATGCAAAATTCTCGAAACAGAATTCTT TGATGGGCTCCTCTTTGGATCAGGGATTTTCATTGGATCCCGGTAGATGTAATGAAAGCTGGTCAAATGCTGCACCATCCACTGGTGTCCAATCTAATTC TTTGATCATAAATGATAGTTTCAGAACGGGTGGTCTTCCAGCAAGTACCATTGTTCGAGATAACATGTCAACAATGACGATGCAGGCAAGGAGCCGGCAG TGCGAGGTTTCTCCTCTATCTACACTGCCCTTACATTTGCAGGACGAGAAAGCAGACTTAGGGTGCCGTTTAGCTTCAGCTAGCAGTGGCGGTGTTGGGG AAATAATCGGTAGTTGGGATGACCATAGACAGGCTTCACCTTACTACTTCAATGCGGCGTCTAGCTCAGCAAACTCATCGATTCCTGATGATGTGATTAA CCAAAGATGGGACGCAAACTGTAACGCAATGTTTCAGAGAAATCCAAGCTTCGGTTCGACCGGACAGTCGAGTTTTATCGATAGCTCGTTGGTAAAGCAT GATGGTGTAGCAGTGGAGGCATCAAGGATATCGAATGGAAGGACATCGATGAACCAGCATAATGTGCAGACGGGTCACAATAATTTTGGCTCCTTGGAAG ATGTAGCTACTGGTTTTATGGTCACCCGGGTAAGTTCTCGGATTAAGTAG
AA sequence Show only first row Show all	>Lus10041020 pacid=23179662 polypeptide=Lus10041020 locus=Lus10041020.g ID=Lus10041020.BGIv1.0 annot-version=v1.0 MIVEQGGSRDQFPIGMRVLAVDDDLTCLLVLETLLRKCQYHVTTTSQARMALTMLRERRNDFDLVISDVHMPDMDGFHLLEKVGLEMDLPVIMLSANSDP KVVMKGITHGACDYLLKPIRIEELKNIWQHVVRRKKTDNRDKNNSDNRDNKPNSQSGEATSEQKLNKKRKDQIDEEDEDSDDNGNDYDDPSSQKKPRVVW SVELHRKFVSAVNHLGVDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISTVANQQANMAAALVGSDASYLQMGPLTGLGLHNVAGNGQFQNGGFR SVTPNGMLGRLNSPAGMSFHGLPSPGMMQVAHVQTGGHLTSQNQFQSVISNANVLQGMPVSLELDQIQPNKGINYMREIPTAIESTSGFADTSMAVGSSN DSFVGASSDKSLFLDRRRLQGTQPDAKFSKQNSLMGSSLDQGFSLDPGRCNESWSNAAPSTGVQSNSLIINDSFRTGGLPASTIVRDNMSTMTMQARSRQ CEVSPLSTLPLHLQDEKADLGCRLASASSGGVGEIIGSWDDHRQASPYYFNAASSSANSSIPDDVINQRWDANCNAMFQRNPSFGSTGQSSFIDSSLVKH DGVAVEASRISNGRTSMNQHNVQTGHNNFGSLEDVATGFMVTRVSSRIK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10041020 [exp]	0	1
AT3G50620			P-loop containing nucleoside t...		Lus10002971 [exp]	1.0	0.8473
AT5G65980			Auxin efflux carrier family pr...		Lus10001303 [exp]	8.3	0.8190
AT5G10110			unknown protein		Lus10022498 [exp]	11.0	0.8043
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Lus10009502 [exp]	12.3	0.8297
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	13.7	0.7929
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10039144 [exp]	15.0	0.8080
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10017841 [exp]	18.0	0.7535
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10028781 [exp]	18.0	0.7457
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10021708 [exp]	18.3	0.7657
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10023053 [exp]	19.2	0.7183

Compare expression of checked genes

Lus10041020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.