Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10020 504 / 1e-179 ATHSD5 hydroxysteroid dehydrogenase 5 (.1) AT5G50700 248 / 2e-79 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 248 / 2e-79 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT3G47350 219 / 1e-68 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT5G50690 216 / 1e-67 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 216 / 1e-67 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT5G50770 214 / 2e-66 ATHSD6 hydroxysteroid dehydrogenase 6 (.1) AT3G47360 206 / 9e-64 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT3G03330 74 / 1e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 69 / 4e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006178 [exp] 675 / 0 AT4G10020 485 / 8e-173 hydroxysteroid dehydrogenase 5 (.1) Lus10009467 [exp] 571 / 0 AT4G10020 501 / 1e-178 hydroxysteroid dehydrogenase 5 (.1) Lus10001280 [exp] 565 / 0 AT4G10020 495 / 5e-176 hydroxysteroid dehydrogenase 5 (.1) Lus10016748 [exp] 257 / 3e-81 AT5G50770 360 / 4e-122 hydroxysteroid dehydrogenase 6 (.1) Lus10032556 [exp] 253 / 3e-81 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1) Lus10043187 [exp] 252 / 7e-81 AT5G50600 404 / 4e-141 hydroxysteroid dehydrogenase 1 (.1) Lus10022441 [exp] 244 / 4e-78 AT5G50770 349 / 3e-120 hydroxysteroid dehydrogenase 6 (.1) Lus10001511 [exp] 238 / 1e-75 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10031448 [exp] 237 / 3e-75 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G073200 [exp] 543 / 0 AT4G10020 494 / 4e-176 hydroxysteroid dehydrogenase 5 (.1) Potri.013G100200 [exp] 538 / 0 AT4G10020 506 / 0.0 hydroxysteroid dehydrogenase 5 (.1) Potri.012G102000 [exp] 239 / 2e-76 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.012G101900 [exp] 231 / 2e-73 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.015G100000 [exp] 230 / 4e-73 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 228 / 4e-72 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.016G048800 [exp] 225 / 7e-71 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048900 [exp] 187 / 5e-56 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1) Potri.008G149201 [exp] 74 / 9e-15 AT1G54870 378 / 3e-132 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.007G086600 [exp] 72 / 8e-14 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10041045 pacid=23179621 polypeptide=Lus10041045 locus=Lus10041045.g ID=Lus10041045.BGIv1.0 annot-version=v1.0 ATGAGAACAAAAGGTGTGAGACTAGCAGGCAGCCGTCCAACAGTATCATCTACACATTTAGGAAACACAAGAAACTACTGTGAACCGGAAATTATGATGG ATTTGGTAAACTCGGTGATGAATTTGTTTGTTCCACCTGCAAGCATGGTGGTGATGGCTTGTTCCTGGCCGGCCTTGTGCTTCATCAACACTTTTGAGTG GCTCTACAAGAGCTTCTACGGTGACGATATGGAAGACAAAGTTGTCATCGTCACCGGTGCTTCTTCTGCCATTGGCGAGCAAATCGCGTACGAATATGCA AAGAGGAGGGTGAACCTCGTATTGGTTGCACGTAGAGAGAACCGGCTGCGAGCAATCAGCGAGAAAGCTAGACTTATGGGTGCTAAGCATGTCATGATTG TAGCAGCAGATGTGGTCAAGGAAGATGACTGCAGGAGATTCGTCGACCAGACTGTAAGCTACTATGGTCGAGTTGATCATCTTGTGAACACTGTAAGTTT GGGTCACACGTTCTACTTGGAAGAAGCTCTGGACACCTCTGTGTTCCCACATTTGATGGACATCAATTTTTGGGGGAATGTGTATCCAACTTGTGTCGCT CTACCTCATCTGCATCAGACCAATGGAAGAATCGTCGTAAATGCTGCAGTTGAGACCTGGTTACCTCTCCCAAGGATGAGCTTGTATGCTGCTGCGAAAG CTGCAGTAATTAACTTCTATGAGACGCTGAGGTACGAAGTGAGCGATGAAATTGGGGTAACCATTGCGACACACGGTTGGGTTGGTAGCAGCTTAATGAG TGGGGGCAAGTTCATGCTAGAAGAAGGTGCTGAGATGCAATGGAGAGAAGAAAGAGAGGGGAACGTAAGTAGCGGTCCACTCGAGAATTACGCAAGGATG ATTGTATCGGGGGCTTGTCGCGGAAACCACTACGTGAGGTATCCAAGCTGGTATGACATCTTCCTCCTCTACAGGTTCTTTGCACCCGGTGTCCTGAACT GGACACTCAGGCAGCTGTTAGCATCTCACGGAGCAAGACGAACGTCTCTGATTGGCACCGGGAGGCCGTTATTGGAAGGCAGCCCATCAGGCAGTCCATC GGCGGCACGAAATACTGTCGCTGGTACGGTCACATTTTCCCCGAGAAGTCCGGTGCAGATGCAGAAACTCGAGTAA
AA sequence Show only first row Show all	>Lus10041045 pacid=23179621 polypeptide=Lus10041045 locus=Lus10041045.g ID=Lus10041045.BGIv1.0 annot-version=v1.0 MRTKGVRLAGSRPTVSSTHLGNTRNYCEPEIMMDLVNSVMNLFVPPASMVVMACSWPALCFINTFEWLYKSFYGDDMEDKVVIVTGASSAIGEQIAYEYA KRRVNLVLVARRENRLRAISEKARLMGAKHVMIVAADVVKEDDCRRFVDQTVSYYGRVDHLVNTVSLGHTFYLEEALDTSVFPHLMDINFWGNVYPTCVA LPHLHQTNGRIVVNAAVETWLPLPRMSLYAAAKAAVINFYETLRYEVSDEIGVTIATHGWVGSSLMSGGKFMLEEGAEMQWREEREGNVSSGPLENYARM IVSGACRGNHYVRYPSWYDIFLLYRFFAPGVLNWTLRQLLASHGARRTSLIGTGRPLLEGSPSGSPSAARNTVAGTVTFSPRSPVQMQKLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10041045 [exp]	0	1
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10006590 [exp]	2.4	0.8533
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10034484 [exp]	15.0	0.7720
AT1G16560			Per1-like family protein (.1.2...		Lus10038885 [exp]	15.1	0.7802
AT5G13100			unknown protein		Lus10015761 [exp]	15.5	0.7684
AT3G42860			zinc knuckle (CCHC-type) famil...		Lus10012985 [exp]	17.8	0.7895
AT4G10020		ATHSD5	hydroxysteroid dehydrogenase 5...		Lus10006178 [exp]	23.4	0.7027
AT3G47620	TCP	AtTCP14, TCP14	"TEOSINTE BRANCHED, cycloidea ...		Lus10042195 [exp]	23.7	0.7606
AT5G28770	bZIP	BZO2H3, ATBZIP6...	Arabidopsis thaliana basic leu...		Lus10015913 [exp]	27.1	0.7661
AT2G41500		EMB2776, LIS	LACHESIS, WD-40 repeat family ...		Lus10004167 [exp]	27.7	0.7596
AT3G20475		ATMSH5	MUTS-homologue 5 (.1)		Lus10021545 [exp]	28.2	0.7704

Compare expression of checked genes

Lus10041045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.