Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71450 148 / 1e-45 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G33760 108 / 8e-30 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G16750 91 / 5e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G77200 91 / 1e-22 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G11590 90 / 2e-22 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT2G35700 89 / 4e-22 AP2_ERF ATERF38 ERF family protein 38 (.1) AT5G25810 89 / 6e-22 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT3G16280 88 / 1e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G32800 87 / 4e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G01250 85 / 9e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006173 [exp] 226 / 2e-76 AT1G71450 167 / 4e-53 Integrase-type DNA-binding superfamily protein (.1) Lus10041052 [exp] 118 / 2e-33 AT1G33760 143 / 3e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10007799 [exp] 97 / 3e-26 AT2G44940 136 / 7e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10004738 [exp] 99 / 6e-26 AT2G35700 144 / 7e-44 ERF family protein 38 (.1) Lus10002953 [exp] 93 / 8e-24 AT1G33760 143 / 2e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10002801 [exp] 88 / 1e-21 AT5G11590 209 / 4e-68 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10003513 [exp] 86 / 4e-21 AT1G33760 140 / 2e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10034949 [exp] 88 / 6e-21 AT4G32800 169 / 3e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10043240 [exp] 84 / 6e-20 AT5G11590 176 / 1e-54 TINY2, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G101100 [exp] 152 / 3e-47 AT1G71450 184 / 1e-59 Integrase-type DNA-binding superfamily protein (.1) Potri.019G075500 [exp] 145 / 9e-45 AT1G71450 200 / 5e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.001G181500 [exp] 141 / 5e-43 AT1G71450 184 / 8e-60 Integrase-type DNA-binding superfamily protein (.1) Potri.019G075600 [exp] 120 / 1e-34 AT1G33760 147 / 6e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.013G101200 [exp] 117 / 2e-33 AT1G33760 149 / 1e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.003G054100 [exp] 114 / 3e-32 AT1G71450 144 / 8e-44 Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 99 / 1e-25 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 97 / 4e-25 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.018G043900 [exp] 88 / 2e-21 AT5G11590 212 / 5e-69 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.006G238600 [exp] 88 / 2e-21 AT5G11590 199 / 8e-64 TINY2, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10041050 pacid=23180019 polypeptide=Lus10041050 locus=Lus10041050.g ID=Lus10041050.BGIv1.0 annot-version=v1.0 ATGAGCAATGGCGGCGGGTCAGGGACTCCCTCGTGCTACAGAGGGGTCCGAAAGCGGAAATGGGGGAAATGGGTATCCGAAATCCGTGAGCCCGGCACCA AAACGAGGGTTTGGCTGGGAAGCTTCGACACGCCGGAGATGGCTGCTGCGGCGTACGACGCCGCCGCGATGTACTTCAGGGGATCGGAAGCAAGACTGAA CTTCCCTGAGGTGGCCCATTGCTTGCCTAGGCCCGAGAGTTCAAGCCCAGACGATATAAGGAGGGCGGCCCATGAAGCGGCTATTCGTGCTGGGCCAATG GACTGGTCTGGTGGTTCTTCATTCAATGTGGGTGGGGATTCCGGCTCAGGCTCCGGTGTGGTTGATAATGAGTCGGGTGGACCAAATGTTGGCCCGGTGA CGGTGAGGCTATCCCCCAGCCAAATTCAGGCGATCAACGAGTCGCCGATGGACTCGCCGCAGACGTGGATGATGGACCATTCGACGATGTCCATGAATGA CGTCGAGTGGCAGGATTACGGTCATAGTGATTCTCTCTGGGATCCTTAA
AA sequence Show only first row Show all	>Lus10041050 pacid=23180019 polypeptide=Lus10041050 locus=Lus10041050.g ID=Lus10041050.BGIv1.0 annot-version=v1.0 MSNGGGSGTPSCYRGVRKRKWGKWVSEIREPGTKTRVWLGSFDTPEMAAAAYDAAAMYFRGSEARLNFPEVAHCLPRPESSSPDDIRRAAHEAAIRAGPM DWSGGSSFNVGGDSGSGSGVVDNESGGPNVGPVTVRLSPSQIQAINESPMDSPQTWMMDHSTMSMNDVEWQDYGHSDSLWDP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71450	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041050 [exp]	0	1
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Lus10006323 [exp]	2.6	0.8934
AT4G27290			S-locus lectin protein kinase ...		Lus10014813 [exp]	3.3	0.9264
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10031033 [exp]	3.5	0.9262
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10034957 [exp]	4.2	0.9262
AT3G51770		ATEOL1, ETO1	ARABIDOPSIS ETHYLENE OVERPRODU...		Lus10012511 [exp]	4.7	0.8316
AT1G70780			unknown protein		Lus10039287 [exp]	4.9	0.9262
					Lus10027606 [exp]	5.5	0.9083
AT2G14440			Leucine-rich repeat protein ki...		Lus10005049 [exp]	6.0	0.8953
AT4G37840		HKL3	hexokinase-like 3 (.1)		Lus10011584 [exp]	9.5	0.8525
AT1G03055			unknown protein		Lus10024837 [exp]	10.7	0.8310

Compare expression of checked genes

Lus10041050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.