Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33760 113 / 1e-31 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G71450 105 / 2e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G16750 87 / 1e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G35700 87 / 2e-21 AP2_ERF ATERF38 ERF family protein 38 (.1) AT1G77200 85 / 4e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G11590 83 / 3e-19 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT3G16280 81 / 1e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G25820 78 / 1e-17 AP2_ERF ESE2 ethylene and salt inducible 2, Integrase-type DNA-binding superfamily protein (.1) AT1G01250 77 / 1e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G44940 79 / 2e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006172 [exp] 187 / 5e-61 AT1G33760 79 / 6e-19 Integrase-type DNA-binding superfamily protein (.1) Lus10002953 [exp] 176 / 3e-56 AT1G33760 143 / 2e-43 Integrase-type DNA-binding superfamily protein (.1) Lus10003513 [exp] 167 / 2e-52 AT1G33760 140 / 2e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10041050 [exp] 113 / 2e-31 AT1G71450 189 / 1e-61 Integrase-type DNA-binding superfamily protein (.1) Lus10006173 [exp] 98 / 2e-25 AT1G71450 167 / 4e-53 Integrase-type DNA-binding superfamily protein (.1) Lus10007799 [exp] 84 / 6e-21 AT2G44940 136 / 7e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10004738 [exp] 87 / 7e-21 AT2G35700 144 / 7e-44 ERF family protein 38 (.1) Lus10034949 [exp] 87 / 2e-20 AT4G32800 169 / 3e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10011123 [exp] 82 / 1e-19 AT5G11590 143 / 6e-43 TINY2, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G075600 [exp] 154 / 2e-47 AT1G33760 147 / 6e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.013G101200 [exp] 151 / 2e-46 AT1G33760 149 / 1e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.003G054100 [exp] 149 / 1e-45 AT1G71450 144 / 8e-44 Integrase-type DNA-binding superfamily protein (.1) Potri.013G101100 [exp] 130 / 3e-38 AT1G71450 184 / 1e-59 Integrase-type DNA-binding superfamily protein (.1) Potri.019G075500 [exp] 120 / 3e-34 AT1G71450 200 / 5e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.001G181500 [exp] 117 / 4e-33 AT1G71450 184 / 8e-60 Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 89 / 1e-21 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 87 / 1e-20 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.018G085700 [exp] 84 / 3e-19 AT4G32800 155 / 4e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.006G163400 [exp] 82 / 1e-18 AT4G32800 159 / 6e-48 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10041052 pacid=23179598 polypeptide=Lus10041052 locus=Lus10041052.g ID=Lus10041052.BGIv1.0 annot-version=v1.0 ATGGAGAATTGTGGGATCGATGATCATGGCGGCGCTGGTGCAGCAGCAAGGAGGTACAGAGGTGTGCGGCAGAGGAAATGGGGGAAATGGGTATCCGAAA TCAGGGAACCGGGTAAGAAGACCCGGATATGGCTCGGCAGCTACGCCACTCCCGAAATGGCGGCGGCAGCCTACGACGCGGCTGCATTATACCTCCGTGG GGTCGAGGGTGGGGCCCAACTCAACTTCCCGGAGCTGGCCCACTCCCTCCCCCGTCCGGCCAGCTCGAGCGTCGAGGACGTTCAGACGGCGGCCCAACAA GCTGCGGCGTTGATGATGATTAACCGGAAGCCGGATCCCTCGCCGGGAGGAGTGGAGATGGCTACGGCGACGGGTCGTTTTGGGCTGAGGCCGGTGCGGG TCGGGTTGTCGCCCAGCCAAATTCAGGCGATTAACGAGACGCCGATGGATTCACCCAATATGTGGATGGAGTTGGCGGGAGAAGCTGTGTTTTTGGGAAG CTACTACGACGCCGTTCCAATGGCTTTGGATGGGTTGGTTATTGACGGCTATGATTTCAGTGGTTTGGATGAGATCATGGAGACGCATCACCAGCCGTCC ATTTGGGATTATTGA
AA sequence Show only first row Show all	>Lus10041052 pacid=23179598 polypeptide=Lus10041052 locus=Lus10041052.g ID=Lus10041052.BGIv1.0 annot-version=v1.0 MENCGIDDHGGAGAAARRYRGVRQRKWGKWVSEIREPGKKTRIWLGSYATPEMAAAAYDAAALYLRGVEGGAQLNFPELAHSLPRPASSSVEDVQTAAQQ AAALMMINRKPDPSPGGVEMATATGRFGLRPVRVGLSPSQIQAINETPMDSPNMWMELAGEAVFLGSYYDAVPMALDGLVIDGYDFSGLDEIMETHHQPS IWDY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041052 [exp]	0	1
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10006172 [exp]	2.4	0.8729
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10000502 [exp]	3.0	0.8996
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10024366 [exp]	6.5	0.8896
AT1G75620			glyoxal oxidase-related protei...		Lus10024312 [exp]	7.7	0.8882
					Lus10042412 [exp]	9.8	0.8032
AT1G24140			Matrixin family protein (.1)		Lus10039464 [exp]	10.2	0.8768
					Lus10016420 [exp]	10.4	0.8691
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025410 [exp]	11.6	0.8741
AT3G57260		AtPR2, PR-2, PR...	PATHOGENESIS-RELATED PROTEIN 2...		Lus10027860 [exp]	13.2	0.8728
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015286 [exp]	13.3	0.8726

Compare expression of checked genes

Lus10041052 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.