Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 635 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41540 533 / 2e-170 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G40910 534 / 9e-170 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 523 / 8e-166 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 511 / 1e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17970 507 / 2e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 513 / 2e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G49140 509 / 8e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41550 511 / 2e-161 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 509 / 1e-159 TAO1 target of AVRB operation1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029722 [exp] 631 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 582 / 0 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10011104 [exp] 555 / 8e-177 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 525 / 2e-165 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 516 / 4e-162 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 514 / 2e-160 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 508 / 1e-158 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030345 [exp] 503 / 2e-158 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018616 [exp] 506 / 8e-157 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069500 [exp] 676 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 674 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 632 / 0 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 629 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069200 [exp] 625 / 0 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 620 / 0 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069600 [exp] 612 / 0 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104301 [exp] 600 / 0 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070651 [exp] 599 / 0 AT5G17680 630 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097300 [exp] 593 / 0 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain CL0022 [flax] [poplar] LRR PF07725 [flax] [poplar] LRR_3 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10041060 pacid=23179786 polypeptide=Lus10041060 locus=Lus10041060.g ID=Lus10041060.BGIv1.0 annot-version=v1.0 ATGAATTCAGTTCCGCCGCCGTGGATCTATCAAGTCTTCCTCAGCTTCAGAGGAGGAGACACCCGCACCAATTTCGTCGACCATCTCTACAAGGAGCTGA CGATCAAGGGCGTCTACACTTTCCGCGACGATTCCAAGCTGGAGCGAGGGAGATTGATCGCCCCGGCGCTGCTTCAGGCCATCCAAGACTCCAGAGTCAC CGTCGTTGTTCTGTCTCGGAATTACGCATCTTCCGACTGGTGCTTGGACGAGCTTGTGAAGATCTTGGAGTGCATGCATACCTTGGGACGGATTGTTATC CCGGTCTTCCACAACGTTGATCCTTCCGATGTTGAGAAGCAGAGCGGCAGCTTCGGATTGGCGTTTTCGGAGCTTCAACAGAAGTTGAAACAGGAGATGG AAATGGAGATGGAGATTGAGACGGAGACGGAGATGGAGAAGAAGGTGAAGAGATGGAAGGAAGCTCTAAAGCAAGTTGCCACGATTTCCGGTTGGGACTC TCGCTATAGGGAAGAAGCGGCTCTGATTGAGCAGATAGTTCGAGATATCTCAGACAAAGTAATGTGCGCACCATCAACTGATGCTGGCGAGTTGGTTGGA ATGGGTTCACGAGTTGAGGAAATGGATAGTCTCCTTCAGCTTGACATGAATGTTGTTCGTATGCTAGGGATCTGGGGATTGAGTGGCATTGGTAAGACGA CCATAGCCAGGGTTATGTTTGATAGGCATTGTAGACAGTTTGAAGCGAGCTGCTTTCTCTCAAATGTTGGAGACAAGTTTAGATCACAAGGTGAAGCTGC TCTACAACACGAACTTCTTTCCAAGACCTTGTTGGAGAGGGATCTGAGCACTTGGTCGTTAGGAAAAGGGTCCAATTTGATTAAGGATAGGTTGTCTAGC CGAAAAGTGCTTATTGTGCTTGATGATGTGGATGACATGGAGCAGTTGGAAGTGTTGGCCAATAAGCTCAACTGGTTTGGTCCTGGAAGTAGGATCATCA TAACCACCCAAGACAAACACTTGCTGGATGCACATGGTGTGAATGTCATATACGAGGCCAAGTGTTTACAGGATGAGGAAGCCTTGCAGCTTTTCAGTCA GTATGCATTTCATCAAAACCAACCCAAAAAGGATTACTGGGAGCTGTCGCATGGGTTTGTATACTATGCCAATGGTCTTCCATTAGCTTTGAAGGTGCTG GGCTCGTTTCTTTACAATAAGAGCACATGCCAGTGGAAAAACGAATTAAATAAACTGAAAGAATTTCCTAATGGAAAGATTAGAGATGTTCTGAAACTAA GCTTTGATGGGCTGGATGAGTCGGATAAAAAAGTGTTCCTTGATCTTGCTTGCTTCTTCAATGGAGAGAACGTAGACGAAGTGCGAGATATTTTAGATGC CTGCGGTTTCTTTCCAGATAGGGCCTTTGAAGTTCTAAAGGATAATGCTATGTTATCAATCTCGCATGGAAAACTTTACATGCATGGCTTACTTCAACAA TTGGGCTGTGAGATCGTTCGTAAGGAATCAGAAGAGAATGGCGAGCGCAGCAGGTTGTGGAAACCGGATGATGTGTTCAGTGTGTTGACAGAGGCCACGG GTACAAAGAAAGTTGAAGGATTAGTCCTTGACATGTCTAAGTCAAGACAAATGCAGTTGAGCTCAAAGGCTTTTGAGAGGATGTTCAAGCTCAGACTAAT CAAGCTATACAATCCTGAATCATCCCAAAGCAATTTCAAAATTCAACTTCTAGATGAACAGCTCCAAAGGATATCTGATGAGCTGAGATATCTGCGTTGG GATGGCTGCCCTTCAAAATCATTGCCATCAGACTTTAGTCCAGAAAAACTAGTGGAGCTTAATCTTCCTTTCAGCAATATTGAACACCTATGGGCAGGAA GACAGCAACTTGGTTACTTAAAAGTAATTAACCTCAATCACTCAAACTTGACCAGAACCCCTGACCTATCAGCAGCTCAAAAACTTGAGGTTTTGAATTT TCGAGATTGTTTGCATTTGGTTGAAGTCTCATCTATTCAGTTTCTGACCAAGCTTAAGAGCCTCGATCTAAAGGGATGTAAAAGACTTAGAAGTATCCCA ACCCTGATTGGGTTAAAAGTACTTGAAACCCTTGATCTCTCTGACTGTTCTCAACTTGGCACCCTTCCTGAACTTCCAAGGAACATAAAGTATTTGTATG TTTGTGGCACTGCAATAGAAGAACTTCCCGCATCGCTGGAAGACCTTGCTTTTCTGATGGAATTGGATATGAAAAACTGTGCAAGGCTTCGGCACATACC TATCAGCGCTTGTAAATTGAATTCTCTTAAAATCTTTAACATATCTGGTTGCCCTCATCTCCTGAGACGCTTGAGCGGGAATGGAAAGGGGGAATTACCT AAATCACTCGGATGTTGTTCAAATTGCACAAGCCTCAGGAACTTTGGTGCTGAGAACAGAAGATGTTTGGAAGGGATTCCTCTAAAAAAAGAAGCAGATT CGCTTACTAGCGTCAAAAGGGACCGTTATTCTTACCCAACGTGTCATCATTTGACCAATGGGGTGGAAGAAATTGAAGAAAAGTGTCTGACCCAAGTGGC CACTAAGAAAAAGCTCTCCAAACAGATCAAGGAAGCTGATAAAAACTGGACTTGTAATGGAGGAGTGGCTCGAATTAACAAAAGACCAAGCATTGCAAGT GATCCCAAAGCTTCTCCAAGAAACGGGGTAGAGCGGAAGTTCACCACTATTATAGGAATTGGGAGCGAAAAGAAGCATTCTGCAAATTCACATCCAGTTC CCAAGTTCAACGAGGCCGGATTGACCAACAAACTCGATGACTTCTCAGCTTCTGTCAAATTCCCTTCAGAACATCCATCCGTTTTTCATGAATTGCCACC CTTTGAATACGAAACCGATTTTATGTATCAGACATTCAACACAGTCAGAACTGCTGTTTCCTATGGTGACCCAGAACTCTTGCAGGTGTCACTTACCCCA GCATCAATTTCCACCAGTGGTAAAATAGCCTCAAAGTTGCAGATTTCATTCTCCTCGAAGAGCTGTCCAGCAACCATGAAAGGATCAGCAATTTCATCAC AATCCTTCTCCAGTCTGCAGCTTTTGTCAAGAAACTTACTACACAAGTTATCAAGCCGCAGTGGGAACGATAAGCCAGAACAGAATGGCTACGTTCTTCC TGGGTCTAAACTAGGTAATGGTATAAACATACAACAGCAAAAGAAAGCATTAGGAGAATACTTGAGCATGTCTGTCGAGGAAATCCATGAAGCCAATGCA TTCGACAACATCGAGAGAAGCACATATGCACTGATCGAACACAGTGGGAGTTCAATGGAGAAGACAGAGCTTGAACACTTGATGTCCATTTTGAGTAAGC TGAAAGAGAGCATCCCTGGTACGATGATCAGCACGAGAATGGCAGAGGCCAAGAGAAAGGGTCTTCCCCTAAAGTCCAGGACCATGAATGCCAATCTAAT GTACGGAGGAGAGAAACTGAGCTCACTGGAGTCGAAATCGAGGATGGTTTTGGAGGAGGAAGAGAAAATCGATGCTGATATCCGACGGCTGATGGCAAGA AAGAAAATGATACAGGGTCAGAAGAGTAAGATCGCGGTGCAAATGGAGAAGACGTACAAGAAGGTGACCAAGGATCTTGGGGAGTTGGAGAAATTGGAAG AGGAGATGAAAGAGGCAGATGAGAAATGGCTGAAGGGGAAGGAGAATCTAGCTGCAGCCAATGCGAGTTGGAAACTTATGAGGGAACGCTTGAACCTTTG A
AA sequence Show only first row Show all	>Lus10041060 pacid=23179786 polypeptide=Lus10041060 locus=Lus10041060.g ID=Lus10041060.BGIv1.0 annot-version=v1.0 MNSVPPPWIYQVFLSFRGGDTRTNFVDHLYKELTIKGVYTFRDDSKLERGRLIAPALLQAIQDSRVTVVVLSRNYASSDWCLDELVKILECMHTLGRIVI PVFHNVDPSDVEKQSGSFGLAFSELQQKLKQEMEMEMEIETETEMEKKVKRWKEALKQVATISGWDSRYREEAALIEQIVRDISDKVMCAPSTDAGELVG MGSRVEEMDSLLQLDMNVVRMLGIWGLSGIGKTTIARVMFDRHCRQFEASCFLSNVGDKFRSQGEAALQHELLSKTLLERDLSTWSLGKGSNLIKDRLSS RKVLIVLDDVDDMEQLEVLANKLNWFGPGSRIIITTQDKHLLDAHGVNVIYEAKCLQDEEALQLFSQYAFHQNQPKKDYWELSHGFVYYANGLPLALKVL GSFLYNKSTCQWKNELNKLKEFPNGKIRDVLKLSFDGLDESDKKVFLDLACFFNGENVDEVRDILDACGFFPDRAFEVLKDNAMLSISHGKLYMHGLLQQ LGCEIVRKESEENGERSRLWKPDDVFSVLTEATGTKKVEGLVLDMSKSRQMQLSSKAFERMFKLRLIKLYNPESSQSNFKIQLLDEQLQRISDELRYLRW DGCPSKSLPSDFSPEKLVELNLPFSNIEHLWAGRQQLGYLKVINLNHSNLTRTPDLSAAQKLEVLNFRDCLHLVEVSSIQFLTKLKSLDLKGCKRLRSIP TLIGLKVLETLDLSDCSQLGTLPELPRNIKYLYVCGTAIEELPASLEDLAFLMELDMKNCARLRHIPISACKLNSLKIFNISGCPHLLRRLSGNGKGELP KSLGCCSNCTSLRNFGAENRRCLEGIPLKKEADSLTSVKRDRYSYPTCHHLTNGVEEIEEKCLTQVATKKKLSKQIKEADKNWTCNGGVARINKRPSIAS DPKASPRNGVERKFTTIIGIGSEKKHSANSHPVPKFNEAGLTNKLDDFSASVKFPSEHPSVFHELPPFEYETDFMYQTFNTVRTAVSYGDPELLQVSLTP ASISTSGKIASKLQISFSSKSCPATMKGSAISSQSFSSLQLLSRNLLHKLSSRSGNDKPEQNGYVLPGSKLGNGINIQQQKKALGEYLSMSVEEIHEANA FDNIERSTYALIEHSGSSMEKTELEHLMSILSKLKESIPGTMISTRMAEAKRKGLPLKSRTMNANLMYGGEKLSSLESKSRMVLEEEEKIDADIRRLMAR KKMIQGQKSKIAVQMEKTYKKVTKDLGELEKLEEEMKEADEKWLKGKENLAAANASWKLMRERLNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10041060 [exp]	0	1
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	2.0	0.9164
AT1G24110			Peroxidase superfamily protein...		Lus10029201 [exp]	3.3	0.8450
AT1G76070			unknown protein		Lus10021840 [exp]	3.5	0.8848
AT1G01440			Protein of unknown function (D...		Lus10001910 [exp]	4.9	0.8603
AT1G32928			unknown protein		Lus10033221 [exp]	5.5	0.8715
AT1G48300			unknown protein		Lus10009975 [exp]	5.7	0.8335
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Lus10003178 [exp]	6.0	0.8446
AT5G54165			unknown protein		Lus10023231 [exp]	6.5	0.8846
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10031029 [exp]	7.0	0.8655
AT2G22760	bHLH	bHLH019	basic helix-loop-helix (bHLH) ...		Lus10006085 [exp]	7.7	0.8346

Compare expression of checked genes

Lus10041060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.