Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09360 494 / 8e-170 LAC14 laccase 14 (.1) AT5G48100 484 / 7e-166 LAC15, TT10, ATLAC15 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) AT5G05390 451 / 6e-153 LAC12 laccase 12 (.1) AT2G30210 441 / 3e-149 LAC3 laccase 3 (.1) AT5G07130 438 / 6e-148 LAC13 laccase 13 (.1) AT2G40370 435 / 1e-146 LAC5 laccase 5 (.1) AT5G03260 431 / 4e-145 LAC11 laccase 11 (.1) AT2G29130 420 / 6e-141 LAC2, ATLAC2 laccase 2 (.1) AT3G09220 407 / 1e-135 LAC7 laccase 7 (.1) AT2G46570 403 / 2e-134 LAC6 laccase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041067 [exp] 584 / 0 AT5G09360 622 / 0.0 laccase 14 (.1) Lus10006157 [exp] 495 / 6e-170 AT5G09360 533 / 0.0 laccase 14 (.1) Lus10026812 [exp] 470 / 4e-161 AT5G09360 540 / 0.0 laccase 14 (.1) Lus10017427 [exp] 440 / 1e-148 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10002227 [exp] 437 / 8e-148 AT5G03260 926 / 0.0 laccase 11 (.1) Lus10023189 [exp] 434 / 2e-146 AT5G03260 930 / 0.0 laccase 11 (.1) Lus10026512 [exp] 434 / 2e-146 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10035546 [exp] 432 / 1e-145 AT3G09220 710 / 0.0 laccase 7 (.1) Lus10036070 [exp] 426 / 7e-144 AT5G09360 495 / 4e-171 laccase 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G200600 [exp] 590 / 0 AT5G48100 607 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.011G071100 [exp] 587 / 0 AT5G48100 612 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.005G200500 [exp] 583 / 0 AT5G48100 615 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.005G200700 [exp] 522 / 0 AT5G48100 635 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.001G206200 [exp] 512 / 8e-177 AT5G09360 796 / 0.0 laccase 14 (.1) Potri.019G088600 [exp] 506 / 1e-174 AT5G09360 607 / 0.0 laccase 14 (.1) Potri.019G088700 [exp] 497 / 5e-171 AT5G09360 599 / 0.0 laccase 14 (.1) Potri.019G088900 [exp] 494 / 6e-170 AT5G09360 598 / 0.0 laccase 14 (.1) Potri.019G088800 [exp] 486 / 1e-166 AT5G09360 599 / 0.0 laccase 14 (.1) Potri.019G088401 [exp] 483 / 1e-165 AT5G09360 592 / 0.0 laccase 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10041066 pacid=23179767 polypeptide=Lus10041066 locus=Lus10041066.g ID=Lus10041066.BGIv1.0 annot-version=v1.0 ATGACGCTTTCTGGGTTGGTTCTTCTCCTTTTAAGTTTCTCCGTCCACGCCGGCGCCGCCGACGCACAGCTGCCGTCTATCCCACGTTACACTTTTGAGG TAAAAGAAGCAGAATACACAAGGCTGTGTAGTAGAAACAAAATCATGACGGTGAATGGGGAATTCCCAGGGCCAACTCTTTACGTACAAAGAGGAGACAT AATCTTCGTCGATGTCATTAACAATAGTCCACATAATGTAACACTTCACTGGCACGGAGTTATCCAGCCAAGGAATCCGTGGATTGATGGTCCGGAATAC ATCACACAATGTCCGATCCAACGAGGAAAAAAATTCAGTCAAAGAGTCGAATTCAGTACAGAAGAAGGAACTTTATGGTGGCACGCCCATAGCGAATGGA CACGAGCCACCGTACATGGAGCCATTGTTGTTCGTCCCAAGAAAGGGTCTACTTACCCCTTCCCCGAGCCCGAAGCTGAGTTCCCCATTATATTTGGAGA ATGGTGGAAGGGTGGTGTGTTTGAAACTTTTCAACAGTTTCTTCATTCCGGTGGAGACCCAAATGCATCGGATGCCATCACAATTAACAGCCAGCCGGGA GATCTCTATCCTTGCTCAAAATTGGGCACGTTCACGGTAGATGTTGACCATGGGAAGACGTACCTCCTCCGCTTAATTAACGCCGCCCTCGAGGACGTGA TGTTCTTCGGCGTGGCGGACCACCAATTGACGGTGGTGGGAGCTGACGGCAGCTACACGAAGCAGTTCACAACAGATTACGTAACCATCTCCCCCGGTCA AACCATGGACGTTTTGCTAGAAGCGAAGCCATTACCCGATTCGTTGCGAAGAACACGTTATTACATGGCCGCCAATGTATTCTCCAGCAACCCAGGTCCC AGGTTCTTCAAACCCATCGCTGCCACTGCCATTCTCAGATACGACCACAACCCTTCATTACCCGATCTGCCAATACCGTCACTGCCCATCCTCCCGCGCG TGAACGACTCCGAGTCAACAATCAGCTTCGGCCGTCGATTGAGAAGCCTATCCATTCCGGCCGACTACCCGGTCCCACAAAAAGTCAACACAAACATATT CCTAACGCTCTCCATCAACATCCAGCCTTGTCCAACCCAGAACTGCCAAGGCCCCTTCGGCAACATACTGGCCGCCAGCGTCAACAACGTCAGCTTCATC CACCCGACATCGATGGACATCCTCAGCGCGTACTACCGCAACATCAGCGGGGTCTACGACGTGGCGGATATCCAGCCCGTACCGACCGTGGGGAGCCAGG GTAACGACTTAACTCAGGTCCCTCCGTTTGCAGCCGCGTCCGCGGCGCGTGGGACGAAAGTGCACGTGCTGGAGTACAATGCGACGGTGGAGGTGGTTTT GCAAGGGACCAACTTGGCGTTGGGGGTTGACCATCCGATCCATTTCCATGGGATGAGCTTCTACGTGGTTGGGATTGGGTTGGGAAGCTTCGATGAGGTG AGGGATTCCAAGAGCTTCAACCTGGTGGACCCGCCTCTGATGAACACCATCGATGTGCCCAGGAATGGGTGGGTTGTTATAAGGTTCACGGCTTTGAATC CGGGAGTGTGGTTGATGCATTGCCACGTGGAGAGGCATCATTCGTGGGGGATGGGGGGTGTGTTCATCGTTAAGAATGGGGAAGGGGATGATGATAGTTC GAAGATGCTTCCGCCACCTCCTGATATGCCACCTTGTTAA
AA sequence Show only first row Show all	>Lus10041066 pacid=23179767 polypeptide=Lus10041066 locus=Lus10041066.g ID=Lus10041066.BGIv1.0 annot-version=v1.0 MTLSGLVLLLLSFSVHAGAADAQLPSIPRYTFEVKEAEYTRLCSRNKIMTVNGEFPGPTLYVQRGDIIFVDVINNSPHNVTLHWHGVIQPRNPWIDGPEY ITQCPIQRGKKFSQRVEFSTEEGTLWWHAHSEWTRATVHGAIVVRPKKGSTYPFPEPEAEFPIIFGEWWKGGVFETFQQFLHSGGDPNASDAITINSQPG DLYPCSKLGTFTVDVDHGKTYLLRLINAALEDVMFFGVADHQLTVVGADGSYTKQFTTDYVTISPGQTMDVLLEAKPLPDSLRRTRYYMAANVFSSNPGP RFFKPIAATAILRYDHNPSLPDLPIPSLPILPRVNDSESTISFGRRLRSLSIPADYPVPQKVNTNIFLTLSINIQPCPTQNCQGPFGNILAASVNNVSFI HPTSMDILSAYYRNISGVYDVADIQPVPTVGSQGNDLTQVPPFAAASAARGTKVHVLEYNATVEVVLQGTNLALGVDHPIHFHGMSFYVVGIGLGSFDEV RDSKSFNLVDPPLMNTIDVPRNGWVVIRFTALNPGVWLMHCHVERHHSWGMGGVFIVKNGEGDDDSSKMLPPPPDMPPC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09360		LAC14	laccase 14 (.1)		Lus10041066 [exp]	0	1
AT1G72230			Cupredoxin superfamily protein...		Lus10025580 [exp]	6.9	0.8982
					Lus10021703 [exp]	7.9	0.8740
AT4G01240			S-adenosyl-L-methionine-depend...		Lus10031968 [exp]	25.3	0.8304
AT1G55210			Disease resistance-responsive ...		Lus10017228 [exp]	25.5	0.8736
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10019531 [exp]	27.2	0.8588
					Lus10005397 [exp]	29.0	0.8671
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10043449 [exp]	29.3	0.8687
					Lus10041974 [exp]	38.4	0.7930
AT5G09530		PRP10, PELPK1	proline-rich protein 10, Pro-G...		Lus10033898 [exp]	39.5	0.8407
AT3G01190			Peroxidase superfamily protein...		Lus10018374 [exp]	39.9	0.8571

Compare expression of checked genes

Lus10041066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.