Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09360 621 / 0 LAC14 laccase 14 (.1) AT5G48100 617 / 0 LAC15, TT10, ATLAC15 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) AT5G05390 573 / 0 LAC12 laccase 12 (.1) AT2G40370 549 / 0 LAC5 laccase 5 (.1) AT2G30210 543 / 0 LAC3 laccase 3 (.1) AT2G29130 538 / 0 LAC2, ATLAC2 laccase 2 (.1) AT2G38080 533 / 0 ATLMCO4, IRX12, LAC4 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) AT5G60020 530 / 0 LAC17, ATLAC17 laccase 17 (.1) AT5G07130 517 / 4e-179 LAC13 laccase 13 (.1) AT5G03260 512 / 3e-177 LAC11 laccase 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006157 [exp] 966 / 0 AT5G09360 533 / 0.0 laccase 14 (.1) Lus10041066 [exp] 629 / 0 AT5G09360 555 / 0.0 laccase 14 (.1) Lus10035517 [exp] 567 / 0 AT2G38080 907 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10027782 [exp] 562 / 0 AT2G38080 887 / 0.0 LACCASE 4, IRREGULAR XYLEM 12, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, Laccase/Diphenol oxidase family protein (.1) Lus10019122 [exp] 555 / 0 AT5G60020 938 / 0.0 laccase 17 (.1) Lus10034439 [exp] 547 / 0 AT5G60020 943 / 0.0 laccase 17 (.1) Lus10017427 [exp] 546 / 0 AT2G40370 894 / 0.0 laccase 5 (.1) Lus10026512 [exp] 544 / 0 AT5G03260 919 / 0.0 laccase 11 (.1) Lus10034614 [exp] 541 / 0 AT5G60020 934 / 0.0 laccase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G200600 [exp] 779 / 0 AT5G48100 607 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.005G200500 [exp] 777 / 0 AT5G48100 615 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.011G071100 [exp] 769 / 0 AT5G48100 612 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.005G200700 [exp] 664 / 0 AT5G48100 635 / 0.0 TRANSPARENT TESTA 10, LACCASE-LIKE 15, Laccase/Diphenol oxidase family protein (.1) Potri.001G206200 [exp] 650 / 0 AT5G09360 796 / 0.0 laccase 14 (.1) Potri.019G088700 [exp] 602 / 0 AT5G09360 599 / 0.0 laccase 14 (.1) Potri.019G088600 [exp] 601 / 0 AT5G09360 607 / 0.0 laccase 14 (.1) Potri.019G088401 [exp] 595 / 0 AT5G09360 592 / 0.0 laccase 14 (.1) Potri.019G088900 [exp] 594 / 0 AT5G09360 598 / 0.0 laccase 14 (.1) Potri.019G088800 [exp] 591 / 0 AT5G09360 599 / 0.0 laccase 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF00394 [flax] [poplar] Cu-oxidase Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07731 [flax] [poplar] Cu-oxidase_2 Multicopper oxidase CL0026 [flax] [poplar] CU_oxidase PF07732 [flax] [poplar] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Lus10041067 pacid=23179667 polypeptide=Lus10041067 locus=Lus10041067.g ID=Lus10041067.BGIv1.0 annot-version=v1.0 ATGCAGGCGTTTCAGCTTCTGGGGCTTCTCATCTTCTGCTGCTTTTTCCTACATGGCCACGCAACAGTCCGCCATCACACCTTTGTGGTGAAAGAAGCAC CATACACAAGACTCTGTAGCACCAAGAACATCATGACCATCAATGGAAAATTCCCAGGAGAAACTCTGTACGTTAACAAAGGCGACACCCTCGTCGTCAA CGTCGTCAACAATAGCCCGCATAACATCACCATCCACTGGCATGGAGTGAATCAACCGGGGAATCCGTGGTCCGACGGTCCGGAATACATCACACAGTGT CCTATTCAGCCGGGCAGTAAATTCAGTCAGAAGATTATCTTGACGACGGAAGAAGGAACCCTATGGTGGCATGCACATAGTGATTGGACTCGAGCCACTG TCTACGGTGCCATTGTTGTGTACCCTAAGAAAGGAGATGCAGTTCCCTACCCTAAGCCTGAAGCTGACGTGCCTATTATCTTTGGAGAATGGTGGAAGCA AGATATATTCCAACTCTTTGAGAACACCCTTCGATCGGGAGGAGACCCCAATGTGTCTGATGCAATCACTATCAACGGTCAACCTGGCGATCGGTTTAAT TGCTCTACTCAAGATATGTTCAAGCTAGTAGTGAAACAAGGCAAGACATACCTCCTCCGACTGATCAACTCAGCCATGCAAGACATAATCTTCTTCTCCA TCGCCGACCACCAGCTCACGGTGGTCGGAACCGACGGAACCTACACCAAACCCTTTAAATCAAACTACATCACCATCTCCCCTGGCCAGACCATCGACGT CTTACTTAAAGCCAACCAACCCAGCAACAAAAAAAACTACTACATGGCCGCCAAATTCTACTCAAGTGCACGCGCCGCCGTCAACCTCAACACCTCCACC GCCATGCTCCAATACTCCACCTCCGCCACCACCGCCACCTCAAACCTCCCAACCCTCCCGGCTAGGAACGACACCAACGCCTCGGTCAACTTCACCGCCA GCTTTCGAAGCTTGGCCGACAAGAAACACCCTATCGACGTCCCCAAGAAAGTAGACACCAACTTGTACTTCACGGTATCCATGAACGTCCTCCCTTGCCC TCCCGGATCAAACTGCACCGGGCCCAGTGGGGACCGGCTGGCTTCGAGCATCAACAACATCAGCTTCGTGGCCAACACTTCCCTGGACGTGCTCAGCGCG TACTACAACAAGATCAGCGGCGTTTACGGGGATGACTTCCCGAGCAAGCCTCCGGTGATGTTTAACTTTACGAATGCGACTATTCCGGCGGTGTACAGGA TTCCGGGTACGGGGAATGAGGTGAAGGTGCTTGAGTACAACTCGTCGGTGGAACTTGTGTTCCAAGGAACGAATTTGCTTGGTGGAGTTGACCACCCCAT GCATCTTCATGGGACAAACTTCTACGTTGTGGGGTGGGGGTTTGGTAACTTTGACAAGGAGAGTGATCCCAAGCGTTATAATCTTGTTGATCCTCCGTTT CAGAACACCATCGCTGTTCCTAGAAACGGGTGGGTTGCCGTCAGATTCAGAGCCACTAATCCTGGGGTTTGGTTCATGCACTGTCATTTGGAGCGGCATG CGTCGTGGGGAATGGATATGACTTTCATTGTGAAGAATGGCAAAGGCCCTAAGGCTAAAATGCTGCCGCCGCCGCCAGACATGCCCCGCTGTTGA
AA sequence Show only first row Show all	>Lus10041067 pacid=23179667 polypeptide=Lus10041067 locus=Lus10041067.g ID=Lus10041067.BGIv1.0 annot-version=v1.0 MQAFQLLGLLIFCCFFLHGHATVRHHTFVVKEAPYTRLCSTKNIMTINGKFPGETLYVNKGDTLVVNVVNNSPHNITIHWHGVNQPGNPWSDGPEYITQC PIQPGSKFSQKIILTTEEGTLWWHAHSDWTRATVYGAIVVYPKKGDAVPYPKPEADVPIIFGEWWKQDIFQLFENTLRSGGDPNVSDAITINGQPGDRFN CSTQDMFKLVVKQGKTYLLRLINSAMQDIIFFSIADHQLTVVGTDGTYTKPFKSNYITISPGQTIDVLLKANQPSNKKNYYMAAKFYSSARAAVNLNTST AMLQYSTSATTATSNLPTLPARNDTNASVNFTASFRSLADKKHPIDVPKKVDTNLYFTVSMNVLPCPPGSNCTGPSGDRLASSINNISFVANTSLDVLSA YYNKISGVYGDDFPSKPPVMFNFTNATIPAVYRIPGTGNEVKVLEYNSSVELVFQGTNLLGGVDHPMHLHGTNFYVVGWGFGNFDKESDPKRYNLVDPPF QNTIAVPRNGWVAVRFRATNPGVWFMHCHLERHASWGMDMTFIVKNGKGPKAKMLPPPPDMPRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09360		LAC14	laccase 14 (.1)		Lus10041067 [exp]	0	1
					Lus10041164 [exp]	2.2	0.9815
AT5G39160			RmlC-like cupins superfamily p...		Lus10021980 [exp]	3.5	0.9801
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10011830 [exp]	3.9	0.9770
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10002839 [exp]	4.0	0.9785
AT5G17740			P-loop containing nucleoside t...		Lus10003213 [exp]	6.5	0.9737
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Lus10039234 [exp]	9.8	0.9616
					Lus10014739 [exp]	10.2	0.9629
AT3G61680			alpha/beta-Hydrolases superfam...		Lus10009811 [exp]	11.7	0.9497
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Lus10017333 [exp]	11.8	0.9640
AT2G01340		At17.1	unknown protein		Lus10036005 [exp]	12.0	0.9790

Compare expression of checked genes

Lus10041067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.