Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 343 / 2e-102 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 336 / 3e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 340 / 1e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G38350 306 / 1e-91 Disease resistance protein (NBS-LRR class) family (.1) AT5G41750 300 / 7e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G19510 293 / 1e-85 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G19500 288 / 6e-85 nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding (.1.2) AT5G40910 291 / 1e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 290 / 3e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63870 288 / 8e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030345 [exp] 1290 / 0 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10026201 [exp] 443 / 5e-140 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 434 / 2e-136 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 423 / 2e-133 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 386 / 4e-118 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10016029 [exp] 374 / 5e-114 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012246 [exp] 360 / 4e-112 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10000121 [exp] 348 / 1e-111 AT5G17680 277 / 1e-82 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10015350 [exp] 345 / 2e-103 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068300 [exp] 511 / 2e-166 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 491 / 7e-159 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 462 / 2e-147 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 459 / 2e-145 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 452 / 2e-141 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 424 / 3e-132 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 412 / 9e-131 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070300 [exp] 406 / 5e-129 AT5G17680 558 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 409 / 2e-127 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G097800 [exp] 406 / 4e-126 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF07725 [flax] [poplar] LRR_3 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10041078 pacid=23179785 polypeptide=Lus10041078 locus=Lus10041078.g ID=Lus10041078.BGIv1.0 annot-version=v1.0 ATGATGTTCTGCGAGTCTCCTTCGAAGATAACCTGGTCGATCCCGTGTGAGATACATCAACGAATAGCTTCTAGCAACAGTACAGCCTCACTGGAGTTGA GCGATCACGAGCCATCCCGAACCATCATGGGTAAAATGCCGGAGTCGAAACTCGTGGACGAAGTAGTGAACGATGTTCTGTACAAATTACACGAGCGATG TCCTCCACCGAGTCAAGACGCAGGTTTGGTCGGAATGGAGTCTCGAATCCAGCAAGTCGAATCCTTACTGCGCCTGGACCTCCCAAATGACGATAAAGTT CTTACCATAGGAATATGGGGAATGGGTGGTATTGGCAAGACTACTCTTGCTAGAACGATATTTGACCAATTGTCCCCACAATTCGAGGGCAGTGTTTTCC TCGAGAATGTCCAGGAGCAACTGAGGAAAAGTAAGACCATACTTTTCTTAAGAGAGGAACTCATACGCCAGATTTTAGAGAGCAGGACACTAGCAACTGA TAACCCCAACAAAAAGCTCGAGTTCGTTCGTGATAGGCTCCGTCGCAGAAAAGTTCTCGTTGTTATCGACGACGTTAATGACTCAATACAACTTCAGGAC ATATTGGGTGGGAGTCATCAGTTTGGTCCAGGAAGTAGAATCATTGTCACGGGAAGAGATAAGCATGTACTTAGCATTGTGGCTGACCGAATTTATGAGG TTAAGTCATTGAACGAAAGTGAAGCTCTCCAGCTTTTCTGCTTGAATGCCTTTCGAAAAGGCCATTCGTTGAAGGATGGTGATATAGAGCTGTCTAATAA ATTTGCGGATTATGCCAGTGGGAATCCCCTGGCTTTAAGAGTTTTGGGGTTGTCACTTTTGGGAAGAAGCAGAGAAGATTGGACAAGTAAAATGAAGAGG CTGGGTAGAATCTCCAATCCTGATATTCAAAGTGTATTAAGAGTAAGCTATGACAGTTTGGATCATGAGGAGCAGAGTGTGTTTCTCGACATTGCTTGCT TCTTCCGAGGCGAAGATCGAGATCACGTGATCAAAGTGTTGGATGCTTGTCACTCTTCTGTAAGTTTCATAATAACAACTCTGTTGGATAAGTCTTTGGC AACGGTTTCTAGCAGCAACACTTTGGAAATGCATGATTTGGTACAAGAACTGGGTTGGGGCATTGTGCATCAAGAGCTGGAGCCAGGAAAACGTACCAGG GTGTGGACTCCCAAGGATATTTTCCAAATTCTAACGAAGAAAAAGGCGAGTGCCTCGATTCAAGGATTGTTCTTAAACTTGTCCAAGGCTAAAGAGATGC ATTTGGAAGGTGATTCATTTGCAAGGATGGACCGCCTTAGATTGCTCAAGTTTCACTGTCCAGATTACAGAACAGATGTTTGTAAGGTGCATCTTCCTTC TCATGGCCTCGAATCTATGTCGGATGAGCTTGTACTTTTCCACTGGCATGGATTCCCTTCTAAATCCTTTCCTCCCAACTTCTGTGCCGAAAATTTAGTC GAGCTCATACTGCCTTTTAGTAAGGTCACACATCTCTGGACAGGAGTTCAGAATCTTGGAAACTTGAGGTTGATCGACTTGGAAGGGTCCAAGAACTTGA AGGAGATTCCAGACTTGTCAGAGGCAGAAAATCTCGAGACAGTAGTTCTTGACGGATGTGAAACACTCGTCGAGCTTCCTTCGTATTTCCAATATCATCT CAAGCTCGTTGGCCTCTATCTCAGAAACTGCAAAAACATCAAATATCTCCCCATAAAATTGGACTCGGAACAACTCAAGCATTTAAATTTATCATCATGC TCAAAGGTTGCAACCTGTCCAGAACTTTCAACGAGGTGCCTACAGGAACTAAATCTAAGCAGAACATCAATCAGGGAACTCCCCACTTCAGTTTACAGAC TGAGAGTTCCAAAAGTGCTCAACTTGGAAGGCTGCTCAAATGTCACGAGCTTCCCAGTGATCAGTGGCGGGGTGAAGAAGATGTTGCTAAGTGGGACTGC CATTAAGGAAGTTGTGTCGACTTCGATAGACCATCTTTCGGATCTCGAAGAATTCCGAATGACGAACAATAAAGCTCTGACCAGCTTTGGAGCTGATCTG GGTAAGTTGAGATGTTTGAAACTTCTTGATTTGTCAGGGTGTTCCAATCTCGACTACTTCAGAGACATGTCAGCTGGAAATCCGTTATACAGTCGCGGAA TTCGGCTTCATGGCTGCAAGAATCTGTCGAAGAAATGTACCAGTTACAGCAGGGAATTTGATGTGGCTCTAAGGGATCGTGGTAGTTATGGAAAGTGTTT GGAGAGGGAGGGAGGGAAGCCAGTTCAGTGGCGAGATCGGGTAGTTGCACAGTGGAAAACGCTATTTCAAGGATGA
AA sequence Show only first row Show all	>Lus10041078 pacid=23179785 polypeptide=Lus10041078 locus=Lus10041078.g ID=Lus10041078.BGIv1.0 annot-version=v1.0 MMFCESPSKITWSIPCEIHQRIASSNSTASLELSDHEPSRTIMGKMPESKLVDEVVNDVLYKLHERCPPPSQDAGLVGMESRIQQVESLLRLDLPNDDKV LTIGIWGMGGIGKTTLARTIFDQLSPQFEGSVFLENVQEQLRKSKTILFLREELIRQILESRTLATDNPNKKLEFVRDRLRRRKVLVVIDDVNDSIQLQD ILGGSHQFGPGSRIIVTGRDKHVLSIVADRIYEVKSLNESEALQLFCLNAFRKGHSLKDGDIELSNKFADYASGNPLALRVLGLSLLGRSREDWTSKMKR LGRISNPDIQSVLRVSYDSLDHEEQSVFLDIACFFRGEDRDHVIKVLDACHSSVSFIITTLLDKSLATVSSSNTLEMHDLVQELGWGIVHQELEPGKRTR VWTPKDIFQILTKKKASASIQGLFLNLSKAKEMHLEGDSFARMDRLRLLKFHCPDYRTDVCKVHLPSHGLESMSDELVLFHWHGFPSKSFPPNFCAENLV ELILPFSKVTHLWTGVQNLGNLRLIDLEGSKNLKEIPDLSEAENLETVVLDGCETLVELPSYFQYHLKLVGLYLRNCKNIKYLPIKLDSEQLKHLNLSSC SKVATCPELSTRCLQELNLSRTSIRELPTSVYRLRVPKVLNLEGCSNVTSFPVISGGVKKMLLSGTAIKEVVSTSIDHLSDLEEFRMTNNKALTSFGADL GKLRCLKLLDLSGCSNLDYFRDMSAGNPLYSRGIRLHGCKNLSKKCTSYSREFDVALRDRGSYGKCLEREGGKPVQWRDRVVAQWKTLFQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10041078 [exp]	0	1
AT5G64500			Major facilitator superfamily ...		Lus10002935 [exp]	1.4	0.9258
AT5G57700			BNR/Asp-box repeat family prot...		Lus10008903 [exp]	2.8	0.9366
AT3G51000			alpha/beta-Hydrolases superfam...		Lus10041790 [exp]	3.5	0.9211
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Lus10004028 [exp]	3.9	0.8990
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10018084 [exp]	4.5	0.9163
AT4G36730	bZIP	GBF1	G-box binding factor 1 (.1.2)		Lus10014324 [exp]	4.7	0.9052
AT3G50440		ATMES10	ARABIDOPSIS THALIANA METHYL ES...		Lus10022467 [exp]	4.9	0.9036
AT5G41410	HD	BEL1	BELL 1, POX (plant homeobox) f...		Lus10024661 [exp]	5.8	0.8945
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Lus10022904 [exp]	8.8	0.8995
AT5G66780			unknown protein		Lus10026022 [exp]	8.8	0.8605

Compare expression of checked genes

Lus10041078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.