Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66350 151 / 8e-40 GRAS RGL1 RGA-like 1 (.1) AT3G03450 145 / 1e-37 GRAS RGL2 RGA-like 2 (.1) AT1G14920 143 / 8e-37 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT2G01570 142 / 2e-36 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT5G17490 134 / 1e-33 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G07530 129 / 1e-31 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT5G59450 125 / 1e-30 GRAS SCL11 GRAS family transcription factor (.1) AT2G37650 118 / 5e-28 GRAS SCL9 GRAS family transcription factor (.1) AT1G07520 115 / 3e-27 GRAS GRAS family transcription factor (.1) AT1G55580 110 / 8e-26 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037753 [exp] 567 / 0 AT1G66350 156 / 8e-42 RGA-like 1 (.1) Lus10036457 [exp] 355 / 7e-121 AT3G03450 60 / 4e-10 RGA-like 2 (.1) Lus10016888 [exp] 358 / 8e-121 AT1G66350 125 / 5e-32 RGA-like 1 (.1) Lus10023621 [exp] 308 / 9e-99 AT3G03450 181 / 4e-50 RGA-like 2 (.1) Lus10036459 [exp] 300 / 2e-95 AT3G03450 171 / 1e-46 RGA-like 2 (.1) Lus10024252 [exp] 299 / 5e-95 AT3G03450 178 / 4e-49 RGA-like 2 (.1) Lus10016889 [exp] 295 / 7e-94 AT1G66350 162 / 7e-44 RGA-like 1 (.1) Lus10037758 [exp] 294 / 6e-93 AT3G03450 186 / 6e-52 RGA-like 2 (.1) Lus10016897 [exp] 291 / 6e-92 AT3G03450 189 / 5e-53 RGA-like 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G143600 [exp] 306 / 7e-98 AT3G03450 205 / 7e-59 RGA-like 2 (.1) Potri.010G143700 [exp] 303 / 5e-96 AT1G66350 182 / 2e-50 RGA-like 1 (.1) Potri.010G143500 [exp] 297 / 3e-94 AT3G03450 182 / 8e-51 RGA-like 2 (.1) Potri.010G143400 [exp] 287 / 2e-91 AT1G66350 207 / 1e-60 RGA-like 1 (.1) Potri.002G195600 [exp] 279 / 4e-87 AT3G03450 209 / 2e-60 RGA-like 2 (.1) Potri.014G120000 [exp] 242 / 3e-73 AT3G03450 174 / 1e-47 RGA-like 2 (.1) Potri.010G143200 [exp] 237 / 1e-72 AT1G66350 198 / 8e-58 RGA-like 1 (.1) Potri.004G089800 [exp] 154 / 2e-40 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 153 / 4e-40 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 149 / 9e-39 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03514 [flax] [poplar] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Lus10041128 pacid=23179915 polypeptide=Lus10041128 locus=Lus10041128.g ID=Lus10041128.BGIv1.0 annot-version=v1.0 ATGGCGGACAAAGATTACGATGTTCAAGCTCAAACTCTTGGAGATTTCTCGTCCGAAAGGATGAGAAATATTAATAATATGCCGGCGATGACTTCGGCCG CCACGCCATTCCAGCTCCTGACAAATCACGACAATAGATCATCATCATCGTCGTCGTCCACCATGACCAACTTCATGTCCTCTGCCGGCCGCAAGTCCCG TCAGGCTTCGCCGCTATCCATCATGGAAACGATCAATCTCGCCGCCAAAAGGATCCTCCAATGCTCCAACAACTCAACCCAGGTGGGTATTCCTTCCTCG TTAAATGTGCATTTTGACCCTTCCATCATCGGAGTTTCGTTTCACGACCAGAAGAACGTGGAGCTCGTCGAATACCTTCTTTCCTCTGCCGACCGCGTCG CCCACAACCGCTACCACGAAGCCACCGCCTTGATCGATCTATGCGACCACTTGTCTTCCCCCACCGGGAACCCAGTCCAGAGAACCGTCCACTATTTCGC CAGAGCTCTCCGCGAAAGAGTCGCCGGAGAAACCGGCAGCGATCAGAGTACTTGTACTATCAACTTGTTAGACGACGACGTTTTCAGGCTACCGAGTCCT TCAGTCCTTTTATCGGTCCACGAGCGGTTCCCTTACTTCCGGATGCAACAGTTGGCGACCGTACAACCCATGGCGGAATCAGCCGCCACCGCCAGAAAGA TTCACTGCATCGATTTGAATATCAAGTCGGGGATCCACTGGATCGGGTTCATGCAGGCATTGGAGACCCGACCCGATAATCACAAGCTCGATTTATTAAA TGTCACTGCACTCTGCGTGGGGCCCGTCGAGCGGGTCGAATCCACGGGGGAGTGGTTGACCGATTTCGCCCGGGCAAAGAGAGTCAACTTCTGCTTTAAA ATAGTCAGAGTCGATGACGTGGCGGAGCTGGACGAGAAAATGTTCGGAGTCGGAGAGAAAGAAGCGGTATTAGTCTACTCGGAGCATTCATTCTCGGCCA TGCTGGGTAAACCGGACCGGATAGAGGCTCTCATGTCAGCGATCAGGCGGTTGAACCCGCAACTCATGGTCGTGACCGAAATGGAAGGGAACCATAACTC GAGCCACTTCGGGACGAGGTTCGTGGAGGCGTTGTTCCACTACGGCGCCGCTTTCGACAGCGTGGAGGCATGCGTCGGGAGGGAGGACGACGTCAGCAGG AGGGCGATGGAGGGTGGGATGATGGGGAGGATGATAGGGAACGTGGTGGCGTGTGAAGGACGGGAGCGGGTGATTCGAGGGGTGAGGCTCGAGATCTGGA GGACGTTCTTCAAAAGGTTTGAGATGGTGGAAAAGAGGCTTAGCACAGTGACGTGGCAGCAAATGAGGTTGGTTCATGAAACGGCGTGCAACGGTAGGTT CAGTACCGTTGAGAGAGATGGGAAGGGGATGTTGATTGGGTGGAAGGGAACGCCGTTAATGTCTATCTCCACGTGGAATTTCTTCCGTTCTGCCAAGCTT GTACCCGGAAGGAAACATTTGCGGGTTGAATTTGAGTAG
AA sequence Show only first row Show all	>Lus10041128 pacid=23179915 polypeptide=Lus10041128 locus=Lus10041128.g ID=Lus10041128.BGIv1.0 annot-version=v1.0 MADKDYDVQAQTLGDFSSERMRNINNMPAMTSAATPFQLLTNHDNRSSSSSSSTMTNFMSSAGRKSRQASPLSIMETINLAAKRILQCSNNSTQVGIPSS LNVHFDPSIIGVSFHDQKNVELVEYLLSSADRVAHNRYHEATALIDLCDHLSSPTGNPVQRTVHYFARALRERVAGETGSDQSTCTINLLDDDVFRLPSP SVLLSVHERFPYFRMQQLATVQPMAESAATARKIHCIDLNIKSGIHWIGFMQALETRPDNHKLDLLNVTALCVGPVERVESTGEWLTDFARAKRVNFCFK IVRVDDVAELDEKMFGVGEKEAVLVYSEHSFSAMLGKPDRIEALMSAIRRLNPQLMVVTEMEGNHNSSHFGTRFVEALFHYGAAFDSVEACVGREDDVSR RAMEGGMMGRMIGNVVACEGRERVIRGVRLEIWRTFFKRFEMVEKRLSTVTWQQMRLVHETACNGRFSTVERDGKGMLIGWKGTPLMSISTWNFFRSAKL VPGRKHLRVEFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Lus10041128 [exp]	0	1
AT2G15130			Plant basic secretory protein ...		Lus10026583 [exp]	1.0	0.9403
AT5G20810			SAUR-like auxin-responsive pro...		Lus10034888 [exp]	4.2	0.7666
AT1G26730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004284 [exp]	4.5	0.9268
					Lus10007539 [exp]	4.7	0.7161
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	5.7	0.9230
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	6.6	0.9230
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	7.4	0.9230
					Lus10013881 [exp]	7.9	0.9205
AT3G07120			RING/U-box superfamily protein...		Lus10038180 [exp]	8.0	0.7850
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	8.1	0.9230

Compare expression of checked genes

Lus10041128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.