Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28220 359 / 9e-124 ATPUP3 purine permease 3 (.1) AT2G33750 334 / 3e-114 ATPUP2 purine permease 2 (.1.2) AT1G28230 329 / 4e-112 ATPUP1, PUP1 purine permease 1 (.1) AT1G30840 163 / 4e-47 ATPUP4 purine permease 4 (.1.2) AT4G18220 162 / 4e-47 Drug/metabolite transporter superfamily protein (.1) AT4G18205 144 / 8e-40 AT4G18200 Nucleotide-sugar transporter family protein (.1) AT4G18210 142 / 3e-39 ATPUP10 purine permease 10 (.1) AT4G18197 140 / 3e-38 PEX17, ATPUP7, AT4G18200 PEROXIN 17, ARABIDOPSIS THALIANA PURINE PERMEASE 7, purine permease 7 (.1) AT2G24220 134 / 2e-36 ATPUP5 purine permease 5 (.1.2) AT1G44750 129 / 8e-35 ATPUP11 purine permease 11 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036465 [exp] 536 / 0 AT1G28220 394 / 1e-136 purine permease 3 (.1) Lus10020950 [exp] 487 / 9e-174 AT1G28220 448 / 3e-158 purine permease 3 (.1) Lus10015906 [exp] 472 / 8e-169 AT1G28220 406 / 2e-142 purine permease 3 (.1) Lus10010757 [exp] 312 / 3e-105 AT1G28220 350 / 8e-120 purine permease 3 (.1) Lus10035636 [exp] 309 / 4e-104 AT1G28220 346 / 3e-118 purine permease 3 (.1) Lus10015832 [exp] 305 / 1e-102 AT1G28220 348 / 5e-119 purine permease 3 (.1) Lus10020416 [exp] 303 / 1e-101 AT1G28220 341 / 2e-116 purine permease 3 (.1) Lus10008713 [exp] 251 / 4e-81 AT1G28220 288 / 2e-95 purine permease 3 (.1) Lus10020939 [exp] 246 / 2e-79 AT1G28220 286 / 9e-95 purine permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G160300 [exp] 418 / 5e-147 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.002G099600 [exp] 265 / 5e-87 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.001G147600 [exp] 175 / 2e-51 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.001G352100 [exp] 168 / 5e-49 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.006G184900 [exp] 157 / 9e-45 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.014G043900 [exp] 150 / 2e-42 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.001G352200 [exp] 145 / 3e-40 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.003G156900 [exp] 138 / 3e-37 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 135 / 1e-36 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10041133 pacid=23179696 polypeptide=Lus10041133 locus=Lus10041133.g ID=Lus10041133.BGIv1.0 annot-version=v1.0 ATGCGGCTCTACTTCCTCCACGGCGGCAAGAGAGTGTGGCTCTCAAGCTGGCTCGAGACCGGCGGCTGGCCAATCATGCTCATACCTCTCTCCATAGCCT ACACCCTCCGCCGCCGTCGCCGTCGAGGTTCAACATCGAAGACTACCTTCTTCCTCATAAAGCCGCGCCTCTTCTACTCCGCCGCCGTCGTCGGCATCCT CACCGGCTTCGACGACTACATCTACGCCTATGGGGTGGCGCGCCTCCCTGTGTCCACGTCGGCTCTGGTGATCGCCACCCAGCTGGCGTTCACCGCTGGG TTCGCCTTCCTCATGGTGAAGCAGAGGTTCACTCCGTACTCAATAAACGCCGTCGTACTGCTGACGGTGGGCGCCGGAGTGCTGGCAATGAACTCCAGCG GGGACCGCCCCGAGGGCGAGTCGGAGAAACAGTACGCCATGGGGTTCGTGATGACGCTGGTGGCGGCTGTGCTGTACGGGTTTGTTCTGCCGTTGGTTGA GCTGGCGTACAAGAAGGCTGCTGACGGCGGCCAGGTGTTGAGCTACACGGTGGTGTTAGAGTTTCAGATGGTGATGACGTTTTTCGCCACCGTCGTGTGT ACCGTCGGCATGCTGGCTAACCATGATTTTCAGGCGATTCCAAGAGAGGCAAGGGAATCAACACTGGGAGAGACCCAGTACTACGTCGTTTTGCTCTTCA GCGCCGTCATCTGGCAGTTCTTCTTCCTGGGAGCGATCGGAGTCATATTCGTGGGGAGCTCGTTGCTGTCCGGAGTCCTGATCGCCGTCCTGCTCCCGGT GACGGAAGTCCTCGCCGTGGTGTTCTACAGCGAGAGTTTCAAGGCGGAGAAGGGAGTGTCTCTGGGGCTTTCCTTGTGGGGATTTGTCTCCTACTTTTAC GGCGAACATCGACAGAAGAAGAAGAACAAGGAGGAGAGGTTGGGTTACGCTCCACAGAGGGAAATGTCGTCCTCGTCTCAAATAGCTTAA
AA sequence Show only first row Show all	>Lus10041133 pacid=23179696 polypeptide=Lus10041133 locus=Lus10041133.g ID=Lus10041133.BGIv1.0 annot-version=v1.0 MRLYFLHGGKRVWLSSWLETGGWPIMLIPLSIAYTLRRRRRRGSTSKTTFFLIKPRLFYSAAVVGILTGFDDYIYAYGVARLPVSTSALVIATQLAFTAG FAFLMVKQRFTPYSINAVVLLTVGAGVLAMNSSGDRPEGESEKQYAMGFVMTLVAAVLYGFVLPLVELAYKKAADGGQVLSYTVVLEFQMVMTFFATVVC TVGMLANHDFQAIPREARESTLGETQYYVVLLFSAVIWQFFFLGAIGVIFVGSSLLSGVLIAVLLPVTEVLAVVFYSESFKAEKGVSLGLSLWGFVSYFY GEHRQKKKNKEERLGYAPQREMSSSSQIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28220		ATPUP3	purine permease 3 (.1)		Lus10041133 [exp]	0	1
AT1G55790			Domain of unknown function (DU...		Lus10002759 [exp]	4.1	0.8790
AT3G61200			Thioesterase superfamily prote...		Lus10000809 [exp]	6.6	0.8663
AT1G55790			Domain of unknown function (DU...		Lus10000235 [exp]	9.5	0.8531
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008836 [exp]	9.5	0.8456
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10022360 [exp]	10.8	0.8496
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10040925 [exp]	16.7	0.8394
AT3G08690		ATUBC11, UBC11	ubiquitin-conjugating enzyme 1...		Lus10007126 [exp]	18.8	0.8329
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Lus10012984 [exp]	19.7	0.8449
					Lus10033310 [exp]	21.0	0.8397
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10028638 [exp]	22.0	0.8368

Compare expression of checked genes

Lus10041133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.