Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34670 303 / 6e-102 MYB ATMYB93 myb domain protein 93 (.1) AT5G10280 290 / 3e-97 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT5G16770 273 / 2e-90 MYB ATMYB9 myb domain protein 9 (.1.2) AT5G65230 263 / 5e-87 MYB ATMYB53 myb domain protein 53 (.1) AT3G02940 247 / 1e-80 MYB ATMYB107 myb domain protein 107 (.1) AT4G17785 236 / 7e-76 MYB ATMYB39 myb domain protein 39 (.1) AT4G21440 233 / 9e-75 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT5G15310 227 / 1e-72 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G61250 225 / 2e-72 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G05100 220 / 5e-70 MYB ATMYB74 myb domain protein 74 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036472 [exp] 548 / 0 AT5G10280 307 / 1e-103 myb domain protein 92 (.1) Lus10040139 [exp] 227 / 5e-74 AT5G16770 231 / 9e-76 myb domain protein 9 (.1.2) Lus10033003 [exp] 231 / 1e-73 AT5G15310 323 / 2e-109 myb domain protein 16 (.1.2) Lus10001093 [exp] 224 / 3e-71 AT5G16770 232 / 4e-74 myb domain protein 9 (.1.2) Lus10018418 [exp] 224 / 4e-71 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10030378 [exp] 221 / 9e-71 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10014784 [exp] 219 / 5e-70 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10039743 [exp] 217 / 8e-70 AT4G21440 296 / 2e-100 A. THALIANA MYB 4, MYB-like 102 (.1) Lus10002593 [exp] 219 / 2e-69 AT4G21440 330 / 2e-112 A. THALIANA MYB 4, MYB-like 102 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G164900 [exp] 363 / 7e-126 AT1G34670 309 / 7e-104 myb domain protein 93 (.1) Potri.002G096800 [exp] 346 / 4e-119 AT1G34670 305 / 2e-102 myb domain protein 93 (.1) Potri.005G074500 [exp] 333 / 5e-114 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.007G093900 [exp] 323 / 4e-110 AT1G34670 289 / 6e-96 myb domain protein 93 (.1) Potri.001G139900 [exp] 255 / 2e-83 AT5G16770 254 / 7e-83 myb domain protein 9 (.1.2) Potri.003G094200 [exp] 248 / 8e-81 AT5G16770 251 / 1e-81 myb domain protein 9 (.1.2) Potri.019G050900 [exp] 245 / 2e-79 AT5G16770 279 / 2e-92 myb domain protein 9 (.1.2) Potri.004G033100 [exp] 234 / 6e-75 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.017G086300 [exp] 232 / 9e-74 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2) Potri.011G041600 [exp] 231 / 2e-73 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10041142 pacid=23179642 polypeptide=Lus10041142 locus=Lus10041142.g ID=Lus10041142.BGIv1.0 annot-version=v1.0 ATGGGGAGGTCTCCTTGCTGCGATGAAAATGGTCTGAAGAAGGGTCCATGGACTCCTGAAGAGGACAAGATCCTGTCCGATTACATTCAGAAAAATGGCC ATAGCAGCTGGAGAGCTCTTCCCAAACTCGCCGGACTTAACAGGTGCGGAAAAAGCTGTCGGCTAAGGTGGACGAACTACCTGAGACCGGATATCAAGAG GGGGAAGTTTTCTCAAGATGAAGAACAGACCATTCTCAATCTCCATGCCATTCTTGGAAACAAATGGTCAGCTATAGCGGGTCATTTACCCGGAAGGACA GATAACGAGATAAAAAACTTTTGGAACACACATTTAAAGAAGAAGCTGATACAAATGGGGTATGACCCGATGACCCACCAACCTAGAACGGACCTATTCG CAACGCTGCCACAGCTCATGGCGTTGGTCCAGCTGAAAGACCTGCTTAACCTCGACCAGCACAACCGGAACGATGACCAAACCACCAGGTTGCAAGCCGA GGCTCTCCAAATGGCCAAGCTTCAGTATGTCCAGTTCCTCCTCCAATCATCGAACACCACTACTGTCCCACCCGCGCCATCTCTCCAGTCTTCCGGAGAC ATGGAGCTCATCAACTTGCTCAACTCTATGGCTTCTTCTTCACCCATGATCAATGGTTCTAATACCAACCAACCACTCCACCATATGTTACTACCTCCTC TCTCTGACCCACAAGTCCCTTTCGGTGGTACTAGTGCACAAATAACAACTAATCCAACTCCTTCGTCGTGGAATATTCTTCCTTCTTCCCACACTCAAAC GAGTGTCATAATCAACTCACCCGGAGCGGGACGCGGGGATGCTAGTACCAGTACCAGCTCCAGCTATGCTGGTACTGGTACTTCTTCTTATTGGCCTGAA CTATTCCTTGACGATCCTATTCTTAGCGATATTTCATTGTGA
AA sequence Show only first row Show all	>Lus10041142 pacid=23179642 polypeptide=Lus10041142 locus=Lus10041142.g ID=Lus10041142.BGIv1.0 annot-version=v1.0 MGRSPCCDENGLKKGPWTPEEDKILSDYIQKNGHSSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQDEEQTILNLHAILGNKWSAIAGHLPGRT DNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDLFATLPQLMALVQLKDLLNLDQHNRNDDQTTRLQAEALQMAKLQYVQFLLQSSNTTTVPPAPSLQSSGD MELINLLNSMASSSPMINGSNTNQPLHHMLLPPLSDPQVPFGGTSAQITTNPTPSSWNILPSSHTQTSVIINSPGAGRGDASTSTSSSYAGTGTSSYWPE LFLDDPILSDISL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10041142 [exp]	0	1
AT5G10280	MYB	ATMYB92, AtMYB6...	myb domain protein 92 (.1)		Lus10036472 [exp]	1.0	0.9875
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10011679 [exp]	1.4	0.9853
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10038937 [exp]	1.7	0.9753
AT2G40370		LAC5	laccase 5 (.1)		Lus10007531 [exp]	2.8	0.9718
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10022130 [exp]	5.2	0.9504
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10027227 [exp]	5.3	0.9549
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Lus10001553 [exp]	5.5	0.9479
AT3G11780			MD-2-related lipid recognition...		Lus10021256 [exp]	5.5	0.9558
AT1G16310			Cation efflux family protein (...		Lus10000061 [exp]	6.7	0.9353
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	7.5	0.9512

Compare expression of checked genes

Lus10041142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.