Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23250 227 / 2e-74 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT2G31180 215 / 3e-70 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT1G06180 214 / 1e-69 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1) AT3G61250 197 / 1e-62 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT1G56160 196 / 5e-62 MYB ATMYB72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 72, myb domain protein 72 (.1) AT1G16490 195 / 7e-62 MYB ATMYB58 myb domain protein 58 (.1) AT1G79180 195 / 1e-61 MYB ATMYB63 myb domain protein 63 (.1) AT3G02940 194 / 5e-61 MYB ATMYB107 myb domain protein 107 (.1) AT1G34670 190 / 5e-59 MYB ATMYB93 myb domain protein 93 (.1) AT5G16770 189 / 6e-59 MYB ATMYB9 myb domain protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021871 [exp] 335 / 6e-118 AT3G23250 233 / 9e-77 myb domain protein 15 (.1.2) Lus10021185 [exp] 243 / 7e-81 AT3G23250 231 / 1e-75 myb domain protein 15 (.1.2) Lus10011820 [exp] 241 / 3e-80 AT3G23250 225 / 2e-73 myb domain protein 15 (.1.2) Lus10003557 [exp] 212 / 4e-68 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10033889 [exp] 211 / 8e-68 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10042561 [exp] 201 / 2e-65 AT3G23250 206 / 5e-67 myb domain protein 15 (.1.2) Lus10022021 [exp] 201 / 2e-65 AT2G31180 219 / 2e-72 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Lus10014784 [exp] 196 / 7e-62 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10030378 [exp] 194 / 2e-61 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G224100 [exp] 222 / 1e-72 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.002G038500 [exp] 219 / 2e-71 AT2G31180 238 / 1e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.008G166700 [exp] 218 / 1e-70 AT3G23250 237 / 2e-77 myb domain protein 15 (.1.2) Potri.019G018200 [exp] 213 / 7e-70 AT2G31180 223 / 1e-73 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) Potri.002G157600 [exp] 196 / 8e-62 AT3G61250 363 / 3e-126 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.004G033100 [exp] 194 / 1e-60 AT4G21440 293 / 4e-97 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.011G041600 [exp] 193 / 4e-60 AT4G21440 311 / 2e-104 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.005G074500 [exp] 192 / 4e-60 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.007G067600 [exp] 192 / 7e-60 AT1G16490 229 / 2e-73 myb domain protein 58 (.1) Potri.005G096600 [exp] 192 / 1e-59 AT1G16490 232 / 1e-74 myb domain protein 58 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10041145 pacid=23179759 polypeptide=Lus10041145 locus=Lus10041145.g ID=Lus10041145.BGIv1.0 annot-version=v1.0 ATGGGGAGAGCTCCATGTTGCGCGAAGATGGGGCTGAAGAGAGGGCCATGGACACCTGAAGAAGACAACATCCTCATCTCCTACATCCGCAATCACGGCC ACACCAACTGGCGCGCTCTCCCTAAACTCGCCGGCCTTTTGAGGTGCGGCAAGAGCTGCCGTCTCCGCTGGATTAACTACCTCAATCCAGACATCAAGCG TGGCAACTTCACTGCCCACGAAGAGCACTCCATCATCCACCTCCACCAACTCCTCGGAAACAAGTGGTCGGCGATAGCGGCTAAATTGCCGGGGAGAACC GACAACGAGATAAAGAACGTATGGCACACCCATCTCAAGAAGAGACTCAATCTGACAAATAATAACCCTGAAACAGAAACCCAGAGCTCTTTGTCGACTC AGCCGTCATTCCGCAGCATTAATAATGGCGGCGCTGCTGTTTCGTCTTCTCTCACCGAAAACTCGCTCTCCTCGCCAGAGACCACCAGTTGCGCGCAATT ACCCTCGTCGTCTTTCTCGCCGGAGACAGAAGATTTTCCGCATTTCGATGAGAGCCTGTGGTCGGAGTCGGGGGAATATTGGCAATTTGATACTCAATTT AGTACGGAGTCTGGTTTAACGGAACTGGACGGCGTAGGAGAAACTAACGGCGTGGTTGACGATTCCATGGTATTCTGGTACGATCTGTTGGTCCAAGCTG GAAGAGATTAA
AA sequence Show only first row Show all	>Lus10041145 pacid=23179759 polypeptide=Lus10041145 locus=Lus10041145.g ID=Lus10041145.BGIv1.0 annot-version=v1.0 MGRAPCCAKMGLKRGPWTPEEDNILISYIRNHGHTNWRALPKLAGLLRCGKSCRLRWINYLNPDIKRGNFTAHEEHSIIHLHQLLGNKWSAIAAKLPGRT DNEIKNVWHTHLKKRLNLTNNNPETETQSSLSTQPSFRSINNGGAAVSSSLTENSLSSPETTSCAQLPSSSFSPETEDFPHFDESLWSESGEYWQFDTQF STESGLTELDGVGETNGVVDDSMVFWYDLLVQAGRD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Lus10041145 [exp]	0	1
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10038524 [exp]	1.4	0.9747
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10023282 [exp]	2.6	0.9700
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Lus10030828 [exp]	5.6	0.9612
AT5G49480		ACP1, ATCP1	Ca2+-binding protein 1, Ca2+-b...		Lus10017063 [exp]	5.9	0.9799
					Lus10006567 [exp]	11.1	0.9733
AT1G30370		DLAH	DAD1-like acylhydrolase, alpha...		Lus10015521 [exp]	12.5	0.9720
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10019136 [exp]	13.6	0.9534
AT2G26530		AR781	Protein of unknown function (D...		Lus10021757 [exp]	15.1	0.9674
AT5G10530			Concanavalin A-like lectin pro...		Lus10007079 [exp]	15.3	0.9584
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10041273 [exp]	18.3	0.9492

Compare expression of checked genes

Lus10041145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.