Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26330 164 / 1e-51 Cupredoxin superfamily protein (.1) AT2G26720 119 / 6e-34 Cupredoxin superfamily protein (.1) AT2G31050 116 / 7e-33 Cupredoxin superfamily protein (.1) AT2G32300 98 / 4e-25 UCC1 uclacyanin 1 (.1) AT3G17675 88 / 6e-23 Cupredoxin superfamily protein (.1) AT3G27200 84 / 2e-20 Cupredoxin superfamily protein (.1) AT5G07475 81 / 2e-19 Cupredoxin superfamily protein (.1) AT2G02850 79 / 3e-19 ARPN plantacyanin (.1) AT3G60270 80 / 1e-18 Cupredoxin superfamily protein (.1) AT4G30590 79 / 3e-18 AtENODL12 early nodulin-like protein 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021925 [exp] 263 / 1e-90 AT5G26330 170 / 5e-54 Cupredoxin superfamily protein (.1) Lus10010533 [exp] 217 / 2e-72 AT5G26330 174 / 1e-55 Cupredoxin superfamily protein (.1) Lus10002451 [exp] 181 / 5e-58 AT5G26330 136 / 2e-40 Cupredoxin superfamily protein (.1) Lus10027143 [exp] 96 / 1e-24 AT2G32300 137 / 9e-40 uclacyanin 1 (.1) Lus10006657 [exp] 96 / 9e-24 AT1G45063 106 / 1e-26 copper ion binding;electron carriers (.1.2) Lus10038098 [exp] 96 / 1e-23 AT1G45063 107 / 1e-27 copper ion binding;electron carriers (.1.2) Lus10041570 [exp] 92 / 1e-23 AT3G27200 167 / 2e-53 Cupredoxin superfamily protein (.1) Lus10002615 [exp] 87 / 5e-22 AT5G26330 96 / 9e-26 Cupredoxin superfamily protein (.1) Lus10025752 [exp] 88 / 1e-21 AT5G20230 101 / 1e-26 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G089900 [exp] 184 / 1e-59 AT5G26330 187 / 7e-61 Cupredoxin superfamily protein (.1) Potri.008G151000 [exp] 177 / 1e-56 AT5G26330 183 / 2e-59 Cupredoxin superfamily protein (.1) Potri.002G161300 [exp] 130 / 1e-38 AT5G26330 146 / 5e-45 Cupredoxin superfamily protein (.1) Potri.006G259101 [exp] 129 / 3e-38 AT5G26330 142 / 2e-43 Cupredoxin superfamily protein (.1) Potri.006G259000 [exp] 129 / 5e-38 AT5G26330 144 / 6e-44 Cupredoxin superfamily protein (.1) Potri.001G268700 [exp] 125 / 7e-37 AT5G26330 138 / 6e-42 Cupredoxin superfamily protein (.1) Potri.002G156401 [exp] 124 / 2e-36 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1) Potri.002G156100 [exp] 124 / 2e-36 AT5G26330 138 / 1e-41 Cupredoxin superfamily protein (.1) Potri.002G052500 [exp] 117 / 1e-33 AT5G26330 130 / 9e-39 Cupredoxin superfamily protein (.1) Potri.003G047300 [exp] 116 / 2e-32 AT5G26330 121 / 2e-34 Cupredoxin superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10041211 pacid=23179920 polypeptide=Lus10041211 locus=Lus10041211.g ID=Lus10041211.BGIv1.0 annot-version=v1.0 ATGGGTATGGCTCACAAAGCTTCTGGCTTTGCACAGCTAGTGTCAATGGCGGTGCTGCTGCACCTGGTAATCCAATCAAATGGAGCTTTTCACAAGGTTG GAGACTCAGTGGGTTGGACTATAATGGGGAGTCCCGATTACAAACAGTGGGCTTCCACCAAGTCCTTCCAACTTGGCGACATTGTTCATTTCGAGTACAA CCCACAGTTCCACAACGTGATGAAGGTAACCCACGCCATGTACAGAGCCTGCAACGCTTCAGCTCCACTAGAAACATACACTACAGGAAACGATTCCATC TCCATAACAACCCGCGGCCACCACTACTTCATCTGCGGCGTCGTCGGCCATTGCCAGTCCGGCCAGAAGGTCGACATCAACGTCCTCCGCACTGATCCTT CTTCTTCGTCGCCACCCCCCGCCGGTGCTGCAGTGGCAGTCTCCCCCACACTTCCTTCCGCACAATCCCCTGCGCCTTCTGCAAATTCAGCCTCTTCCTT CATCACTCCCATGGCTCTTCTCCTCGCTGCCGGCGCAATCCTCTCCCATCTCGGATTCGCTTAA
AA sequence Show only first row Show all	>Lus10041211 pacid=23179920 polypeptide=Lus10041211 locus=Lus10041211.g ID=Lus10041211.BGIv1.0 annot-version=v1.0 MGMAHKASGFAQLVSMAVLLHLVIQSNGAFHKVGDSVGWTIMGSPDYKQWASTKSFQLGDIVHFEYNPQFHNVMKVTHAMYRACNASAPLETYTTGNDSI SITTRGHHYFICGVVGHCQSGQKVDINVLRTDPSSSSPPPAGAAVAVSPTLPSAQSPAPSANSASSFITPMALLLAAGAILSHLGFA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26330			Cupredoxin superfamily protein...		Lus10041211 [exp]	0	1
AT5G14940			Major facilitator superfamily ...		Lus10032177 [exp]	1.0	0.9772
AT1G17620			Late embryogenesis abundant (L...		Lus10037638 [exp]	2.0	0.9667
AT1G24030			Protein kinase superfamily pro...		Lus10010703 [exp]	3.5	0.9651
AT2G37900			Major facilitator superfamily ...		Lus10024340 [exp]	5.5	0.9588
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Lus10032236 [exp]	5.9	0.9603
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10016872 [exp]	8.2	0.9614
AT5G17600			RING/U-box superfamily protein...		Lus10013618 [exp]	9.9	0.9146
AT1G48780			unknown protein		Lus10009633 [exp]	12.1	0.9302
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10032530 [exp]	14.8	0.9486
AT1G17620			Late embryogenesis abundant (L...		Lus10015622 [exp]	16.0	0.9518

Compare expression of checked genes

Lus10041211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.