Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07040 480 / 6e-155 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G35450 279 / 3e-80 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G48620 278 / 5e-80 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 273 / 3e-78 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G53350 272 / 1e-77 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59780 265 / 4e-75 NB-ARC domain-containing disease resistance protein (.1) AT1G58390 246 / 1e-68 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G50180 226 / 5e-62 NB-ARC domain-containing disease resistance protein (.1) AT1G59620 223 / 4e-61 CW9 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G59218 223 / 4e-60 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020016 [exp] 917 / 0 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 903 / 0 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 889 / 0 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 885 / 0 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 688 / 0 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10019530 [exp] 540 / 0 AT3G07040 311 / 4e-95 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 497 / 1e-161 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 396 / 4e-123 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 397 / 5e-123 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G216800 [exp] 533 / 2e-175 AT3G07040 573 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.018G013500 [exp] 460 / 1e-147 AT3G07040 484 / 7e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134500 [exp] 444 / 5e-141 AT3G07040 422 / 1e-132 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099100 [exp] 434 / 1e-137 AT3G07040 482 / 8e-156 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134450 [exp] 430 / 8e-136 AT3G07040 488 / 1e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134300 [exp] 429 / 2e-135 AT3G07040 487 / 2e-157 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.005G035400 [exp] 422 / 1e-132 AT3G07040 422 / 6e-133 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.003G099000 [exp] 420 / 8e-132 AT3G07040 479 / 2e-154 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134701 [exp] 417 / 7e-131 AT3G07040 464 / 6e-149 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Potri.001G134400 [exp] 408 / 2e-127 AT3G07040 427 / 3e-134 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10041243 pacid=23179653 polypeptide=Lus10041243 locus=Lus10041243.g ID=Lus10041243.BGIv1.0 annot-version=v1.0 ATGGCCGGACTCCCGGTGGACTGCTTAGCCCAGAAATTGGACTCCTTGCTACAGACGGAATCCACCTTGTTCGAAGAAGCTCGCGACCAGGTCGAAGAAA TCAAGTGCGAGCTGGCCGCCATGAGATCATTTCTAGAAGATTCATACGACTCCAAAGTTTCCCACTCCAAATCTAAGCAAACCCAACTCGCCCACGTCAG GGATTTGGTCTACGACGCCGAGGACATCGTCGACGAGTTCATCCACCACCGGAGCAAGTGGGCAAGCAGCAGCTTTTCTGGGTATCTCCGTACAACCCTG TGCTTCCCTCTTTTCTTCTGGGAGAGGCGTCAGATTGCAATCAAGCTCCGAGAGATAAACTCGCTGATCAGATCCATCCCTGAGAGGAATCAGCGATACC AATTAATAATGGATCATGTTCAGCCCCGAAACGGCGGCCCCGTGGAATCGTTCAATTCGGAGTCTGCTCTGTTTCTGAAAGGGGAAGATCTCGTTGGGAT CGAAGCATCTAGGGATCTAATTACCCGGTGGCTCACTGGCGGCGGCGGTTCTGGCAAGACTATTTCGGTGGTGGGCATGGGCGGCTCCGGTAAGACTACT CTTGCTGCTAATGTGTTCAATTCTCCGGCTGTGAAACGTTGCTTTGACTGTGTTGCTTGGGTTACTGTCTCACAATCCTTTGTCATTGAGGATTTGTTGA GAAGCTTAATTAAGGAATTCAGTAAGACTGATAATGATGAATTGAGTAGGTTGGGTTATCGAGAGCTTGTTGAGAAGCTAGTTCAATATTTGGAACATAG GAGTTACTTGGTTGTTCTTGATGATGTATGGAATCCTAATGTGTGGAGTGAGATCAAAGGGTTGCTTCCAGATGGGGATATTAGAAGCAAGGCTATGATC ACGACGCGAATGGAGGACATTGCGTTGTACTGTTCTCCTTCTTCTTCTCAAGAAGGAAGCCACATTCACCATGTCAAGCCGCTCGAGAAGGACGAGGCAT GGGAGCTGTTCTGCTTGAGGGCCTTCACTAACAAAAGCTGTCCTCCTCAGCTTCTTGACCTTGCTTCCGATATTGTTGAGAAATGCCAAGGTTTGCCTCT AGCTATCGTGTCGCTGGGCGGCCTCTTGAGCACGAAAGGATGTTCAGTGGCTGAGTGGTCGATGGTTCGTGGGAATTTGAGGTGGGAGTTGAGCAACAAT CAAATGCTTCAGCCGATCAGAAGCATACTTCTGTTGAGCTACTATGACCTATCTTATCGACTGAGGTGTTGCTTCCTCTACTGCTGTTTGTTTCCGGAGG ACAGCAAGGTATGGTGCGGTAGGCTTATTCGACTGTGGATAGCAGAAGGGTTCATAGAAATCGAAGGAGCATCAACACCTGAGGAGGTTGCTAGGAGGTA CCTTATGGAATTGATCAGTCGAAACATGCTCCAATTCGTGGACTCAGAGCTGGCTACGAATGACAGAATGTGTAAGATGCACGACATGTATCGAGAGGTT GGTCTTACCATAGCAAGCCAGGACAAGTTTTTCTTGATCCATGATGTTGGAAAGTCTGAAGCTTTACTTAGTATTGATAACCAGCATCAGCTGCAGCATC ATCGCCTGTCTGTTCATCAAGTAAGCAGGGCTAACCAAGGAGAAATGATCGAATTGATCGAGGCTATGTCACGAATTCGCTCTCTCTTCATAGTTCCTAT AGATGGGCGGTACGGTTTCTCTCTACGTGAGTTGGATTGCAGGCAGTTTAAGTACCTTAGGGTGTTGGATTTGGAAGAAGCTCCTGTTGAGGAGTTACCT GAAAACATTGACATTCTGTTCAATTTGAGGTTCTTGAACTTGTTTGCCACTCTAGTGAAAAAGTTACCGAACTCAATTGGGAAGCTACAGAACCTACAAA CTCTAGATTTGGTAAGCACCAACGTCGAAACTCTCCCTAAAGAGGTGATGGAGTTGTGTAAACTACGCCACTTATCCACAGGCCACTTGAAACTCGCAAA GTTCAGGCCTGACGGTATAAAACTTGCTCTTGGATCAGATATCAGTAAGCTGAAGAGCTTGCAATGTCTGCGTTTGGTGGAAGCAAGTGGGCATTTGGTG AAGCAATTGAGACTGATGACACAGCTTGTAGTGCTCGGACTCACAAACATCAAAGGGAAAGCTCAAATGGATGACTTATGCAGCTCACTTAAGAACATGA CTCTGCTGGAGAGGCTTACCATTGCAATTGGGAACGAGAAGGAGATCCTTCACTTGGACGCACTTGGTCGATTCCCTCCTCTTCCGCGCCTTCAATACCT CACCCTATTCGGGAAGCTTGAGAAGTTTCCGCGGTGGGTTTGCTCTCTTCCAAGCCTGATGGACTTGCAGATGCATTGGAGTTGCCTGCCGGTCGAAGAG GATCCTCTGATGCATCTACACCAGTTGCCGAGTTTGAGCAGCATTTTCCTTAACAATGCCTGCCAAGGGACACAGTTGGATTTTCCAAGAGGGTTTGAGA ATCTGAAAACATTGGCTTTGAAGAATTTTGGTGGACTTGAAAGAATAGCTATAGCAGAAGGAGCAATGCCATCCCTGAAAATACTGCAAGTTTCTAGCTG CATGAATCTGAAGACTATTCCACAAGGCATTCAGCATCTAACTGAGCTCCAACAGTTTAGACTGGAGCTCGTACCGGTGAAGCTCGTGGAGAGGATTCGT GGGCAGTATCGTCGCTACGTTCAACACATCCCTCTCATCCAATGTCACTACTACTCATCAACTGGGAGATACGTTCAGGAAAACTTGTTCTAG
AA sequence Show only first row Show all	>Lus10041243 pacid=23179653 polypeptide=Lus10041243 locus=Lus10041243.g ID=Lus10041243.BGIv1.0 annot-version=v1.0 MAGLPVDCLAQKLDSLLQTESTLFEEARDQVEEIKCELAAMRSFLEDSYDSKVSHSKSKQTQLAHVRDLVYDAEDIVDEFIHHRSKWASSSFSGYLRTTL CFPLFFWERRQIAIKLREINSLIRSIPERNQRYQLIMDHVQPRNGGPVESFNSESALFLKGEDLVGIEASRDLITRWLTGGGGSGKTISVVGMGGSGKTT LAANVFNSPAVKRCFDCVAWVTVSQSFVIEDLLRSLIKEFSKTDNDELSRLGYRELVEKLVQYLEHRSYLVVLDDVWNPNVWSEIKGLLPDGDIRSKAMI TTRMEDIALYCSPSSSQEGSHIHHVKPLEKDEAWELFCLRAFTNKSCPPQLLDLASDIVEKCQGLPLAIVSLGGLLSTKGCSVAEWSMVRGNLRWELSNN QMLQPIRSILLLSYYDLSYRLRCCFLYCCLFPEDSKVWCGRLIRLWIAEGFIEIEGASTPEEVARRYLMELISRNMLQFVDSELATNDRMCKMHDMYREV GLTIASQDKFFLIHDVGKSEALLSIDNQHQLQHHRLSVHQVSRANQGEMIELIEAMSRIRSLFIVPIDGRYGFSLRELDCRQFKYLRVLDLEEAPVEELP ENIDILFNLRFLNLFATLVKKLPNSIGKLQNLQTLDLVSTNVETLPKEVMELCKLRHLSTGHLKLAKFRPDGIKLALGSDISKLKSLQCLRLVEASGHLV KQLRLMTQLVVLGLTNIKGKAQMDDLCSSLKNMTLLERLTIAIGNEKEILHLDALGRFPPLPRLQYLTLFGKLEKFPRWVCSLPSLMDLQMHWSCLPVEE DPLMHLHQLPSLSSIFLNNACQGTQLDFPRGFENLKTLALKNFGGLERIAIAEGAMPSLKILQVSSCMNLKTIPQGIQHLTELQQFRLELVPVKLVERIR GQYRRYVQHIPLIQCHYYSSTGRYVQENLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10041243 [exp]	0	1
AT5G53900			Serine/threonine-protein kinas...		Lus10041936 [exp]	9.5	0.6750
AT3G54880			unknown protein		Lus10013824 [exp]	31.1	0.6433
AT1G75820		ATCLV1, FLO5, F...	FLOWER DEVELOPMENT 5, FASCIATA...		Lus10040592 [exp]	67.5	0.6347
AT3G09925			Pollen Ole e 1 allergen and ex...		Lus10023887 [exp]	71.5	0.5840
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026328 [exp]	75.4	0.6220
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10037150 [exp]	79.5	0.6049
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10033861 [exp]	81.6	0.5778
					Lus10008146 [exp]	103.5	0.5988
AT5G62040		BFT	brother of FT and TFL1, PEBP (...		Lus10005753 [exp]	156.7	0.5923
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10025863 [exp]	205.2	0.5796

Compare expression of checked genes

Lus10041243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.