Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G28315 501 / 1e-179 Nucleotide/sugar transporter family protein (.1) AT1G06890 397 / 2e-138 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT2G30460 391 / 4e-136 Nucleotide/sugar transporter family protein (.1.2) AT1G21070 193 / 1e-58 Nucleotide-sugar transporter family protein (.1) AT4G09810 188 / 6e-57 Nucleotide-sugar transporter family protein (.1) AT5G42420 187 / 2e-56 Nucleotide-sugar transporter family protein (.1.2) AT1G76670 184 / 2e-55 Nucleotide-sugar transporter family protein (.1) AT1G34020 184 / 3e-55 Nucleotide-sugar transporter family protein (.1) AT4G39390 170 / 4e-50 NST-K1, ATNST-KT1 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) AT5G57100 122 / 2e-31 Nucleotide/sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037397 [exp] 650 / 0 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10021464 [exp] 577 / 0 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10041314 [exp] 532 / 0 AT2G28315 420 / 1e-148 Nucleotide/sugar transporter family protein (.1) Lus10008596 [exp] 357 / 2e-122 AT2G30460 569 / 0.0 Nucleotide/sugar transporter family protein (.1.2) Lus10009918 [exp] 337 / 2e-115 AT1G06890 493 / 7e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Lus10035824 [exp] 180 / 8e-54 AT1G21070 545 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10036606 [exp] 179 / 2e-53 AT1G21070 547 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10005790 [exp] 178 / 4e-53 AT4G09810 536 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10006810 [exp] 179 / 5e-53 AT4G09810 542 / 0.0 Nucleotide-sugar transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G211900 [exp] 511 / 0 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.009G011100 [exp] 497 / 4e-178 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.013G154800 [exp] 391 / 3e-136 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.019G128900 [exp] 390 / 1e-135 AT1G06890 550 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) Potri.002G000500 [exp] 189 / 2e-57 AT1G76670 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G196500 [exp] 189 / 3e-57 AT4G09810 543 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G260300 [exp] 189 / 3e-57 AT1G21070 510 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.002G064700 [exp] 184 / 3e-55 AT4G09810 531 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G086700 [exp] 178 / 3e-53 AT4G39390 457 / 1e-162 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3) Potri.007G077900 [exp] 177 / 1e-52 AT4G39390 521 / 0.0 A. THALIANA NUCLEOTIDE SUGAR TRANSPORTER-KT 1, nucleotide sugar transporter-KT 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10041315 pacid=23179698 polypeptide=Lus10041315 locus=Lus10041315.g ID=Lus10041315.BGIv1.0 annot-version=v1.0 ATGGGAGAAATGGGAGGAATCCAGCTTGGTGTTATTGGGGCTCTCTTCCTTTCAGTTGCATCCTCTGTCTCCATTGTCATCTGCAACAAAGCTCTGATGA GCAATCTTGGCTTCCCTTTTGCAACGACGCTGACCAGTTGGCACCTGGTGGTGACGTTCTGCACGCTCTACGTGGCTCACCGATTCAACCTGTTCGAGTC AAAGTCGGTCGACACGAAAACCGTGATTCTGTTTGGACTCCTGAATGGTGTCTCTATTGGGTTCCTTAACCTCAGCTTGGGATTCAATTCCATTGGCTTT TACCAGATGACAAAGCTTGCGATCATCCCCTTCACTGTCTTGTTGGAAACCCTTTTCCTCAATAAGCATTTCAGCCAGAAGATAAAGTTTGCTCTGTTCC TGCTGCTAGTTGGAGTTGGGATAGCATCAGTGACAGATTTGCAGCTCAATTGCCTTGGAACTGTTCTGTCTCTTCTTGCCATCTTAACTACCTGTGTTGG CCAAATTCTGACAAACACAATCCAGAAGAGGCTGAATGTGTCGTCAACCCAGCTGCTGTATCAATCAGCACCATACCAAGCAGCCATTCTCTTTGTCTCT GGCCCTTTTGTTGACCATTTCCTCACCAAGAAGAATGTCTTTGCGTACAAATACAACCCCCTTGTAGTGACGTTCATAATGTTGTCGTGCCTGATAGCGG TGGCGGTGAACTTCAGCACATTCATGGTGATAGGGAAGACATCCCCAGTGACATACCAAGTGTTGGGGCACTTGAAGACATGCCTTGTACTGCTGTTGGG CTACACATTGCTGCATGATCCTTTCTCGTACAGGAACATTGTCGGGATACTTGTGGCCATGGGTGGCATGGTTCTGTACTCTTACTTCTGCACCCAAGAG GCCAAGAAGAAGGTGTTATCAGTGGATGGGTCTCAGGTAGTGAAGGATAAGGATGATGTTCGTGCTCCATTGATGGGAGGAGTACAGCAAGACAAGGATA ATGCTGAGGCTAAGAAACTACCAAAGGATTCTCTTGTTTAA
AA sequence Show only first row Show all	>Lus10041315 pacid=23179698 polypeptide=Lus10041315 locus=Lus10041315.g ID=Lus10041315.BGIv1.0 annot-version=v1.0 MGEMGGIQLGVIGALFLSVASSVSIVICNKALMSNLGFPFATTLTSWHLVVTFCTLYVAHRFNLFESKSVDTKTVILFGLLNGVSIGFLNLSLGFNSIGF YQMTKLAIIPFTVLLETLFLNKHFSQKIKFALFLLLVGVGIASVTDLQLNCLGTVLSLLAILTTCVGQILTNTIQKRLNVSSTQLLYQSAPYQAAILFVS GPFVDHFLTKKNVFAYKYNPLVVTFIMLSCLIAVAVNFSTFMVIGKTSPVTYQVLGHLKTCLVLLLGYTLLHDPFSYRNIVGILVAMGGMVLYSYFCTQE AKKKVLSVDGSQVVKDKDDVRAPLMGGVQQDKDNAEAKKLPKDSLV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28315			Nucleotide/sugar transporter f...		Lus10041315 [exp]	0	1
AT2G28315			Nucleotide/sugar transporter f...		Lus10041314 [exp]	1.0	0.9988
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10026487 [exp]	2.0	0.9942
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Lus10019917 [exp]	2.4	0.9937
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10017863 [exp]	2.6	0.9852
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10019479 [exp]	4.9	0.9873
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Lus10035836 [exp]	5.0	0.9870
AT3G42950			Pectin lyase-like superfamily ...		Lus10027646 [exp]	5.5	0.9854
AT2G28315			Nucleotide/sugar transporter f...		Lus10037397 [exp]	5.5	0.9824
AT3G61750			Cytochrome b561/ferric reducta...		Lus10012625 [exp]	6.9	0.9851
AT3G61750			Cytochrome b561/ferric reducta...		Lus10010120 [exp]	7.3	0.9846

Compare expression of checked genes

Lus10041315 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.