Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03340 280 / 4e-90 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 275 / 5e-88 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G53230 265 / 4e-84 ATPase, AAA-type, CDC48 protein (.1) AT3G01610 106 / 1e-26 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT3G56690 91 / 4e-21 CIP111 Cam interacting protein 111 (.1) AT5G53170 84 / 5e-19 FTSH11 FTSH protease 11 (.1) AT1G45000 82 / 3e-18 AAA-type ATPase family protein (.1.2) AT5G43010 81 / 5e-18 RPT4A regulatory particle triple-A ATPase 4A (.1) AT3G16290 81 / 8e-18 EMB2083 embryo defective 2083, AAA-type ATPase family protein (.1) AT2G03670 79 / 3e-17 CDC48B cell division cycle 48B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037385 [exp] 335 / 4e-111 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 282 / 9e-91 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 272 / 5e-87 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 268 / 9e-86 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 266 / 1e-84 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 266 / 1e-84 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10001403 [exp] 103 / 6e-29 AT3G09840 114 / 6e-31 cell division cycle 48 (.1) Lus10001402 [exp] 96 / 4e-23 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10020255 [exp] 90 / 7e-21 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G125500 [exp] 281 / 1e-90 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.016G091600 [exp] 281 / 2e-90 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 279 / 1e-89 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 270 / 5e-86 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 241 / 2e-75 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G035000 [exp] 92 / 8e-22 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.013G151600 [exp] 89 / 2e-20 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.001G128700 [exp] 87 / 6e-20 AT2G03670 766 / 0.0 cell division cycle 48B (.1) Potri.012G000700 [exp] 83 / 1e-18 AT5G53170 1076 / 0.0 FTSH protease 11 (.1) Potri.003G050600 [exp] 83 / 2e-18 AT3G16290 1159 / 0.0 embryo defective 2083, AAA-type ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10041332 pacid=23179580 polypeptide=Lus10041332 locus=Lus10041332.g ID=Lus10041332.BGIv1.0 annot-version=v1.0 ATGGACGGCATGTCAGCAAAGAAGACCGATTTCATAATCGGAACCACAAACAGGCCCGACATCATCGATCCGGCACTCCTGAGGCCCGGCCGTCTTGACC AGTTGATTTATATCCCTCTTCCGGATGAGGATTCGCGCCACAACATCTTCAAAGCCTGGTTAAGGAAATCGCCCGTGGCAAAGGATGTTGACTTGAGAGC ATTGGCTAAATACACGCAAGGGTTCAGTGGCGCTGATATCACTGAGATATGCCAGCGGCCTTGCAAGTATGCCATAAGAGAGAACATAGAGACGGATATT GAAAGGGAAAGGAGGAGGAGGGACACCCCGGAAGCGATGCAGGAGGACATGGACGACGAGGTTGCAGAGATCAAAGCTGCACATTTCGAAGAGTCGATGA AGTATGCTCGAAGGAGTGTGAGTGACGCAGATATCCGCAAGTACCAGACGTTTGCTCAGACATTGCAGCAATCTAGGGGTGTAGGATCAGAGTTCAGGTT TTTGGAATCTCGAACCGGGATGGCTGCTGCGGCCGATCCGTTCTCAACTTCGGCTGGTGGAGCTGATGAAGATGATTTGCATAGTTAG
AA sequence Show only first row Show all	>Lus10041332 pacid=23179580 polypeptide=Lus10041332 locus=Lus10041332.g ID=Lus10041332.BGIv1.0 annot-version=v1.0 MDGMSAKKTDFIIGTTNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHNIFKAWLRKSPVAKDVDLRALAKYTQGFSGADITEICQRPCKYAIRENIETDI ERERRRRDTPEAMQEDMDDEVAEIKAAHFEESMKYARRSVSDADIRKYQTFAQTLQQSRGVGSEFRFLESRTGMAAAADPFSTSAGGADEDDLHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10041332 [exp]	0	1
					Lus10000351 [exp]	3.9	1.0000
					Lus10002886 [exp]	5.5	1.0000
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10021543 [exp]	6.7	1.0000
					Lus10014748 [exp]	7.5	1.0000
AT3G26880			Plant self-incompatibility pro...		Lus10022631 [exp]	8.4	1.0000
AT3G25050		XTH3	xyloglucan endotransglucosylas...		Lus10022782 [exp]	9.2	1.0000
					Lus10023108 [exp]	9.9	1.0000
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Lus10023249 [exp]	11.0	1.0000
					Lus10024321 [exp]	11.2	1.0000
AT3G52470			Late embryogenesis abundant (L...		Lus10027133 [exp]	11.7	0.8202

Compare expression of checked genes

Lus10041332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.