Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19790 75 / 5e-17 AP2_ERF RAP2.11 related to AP2 11 (.1) AT4G11140 66 / 8e-14 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT4G23750 64 / 7e-13 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT5G18560 62 / 3e-12 AP2_ERF PUCHI Integrase-type DNA-binding superfamily protein (.1) AT3G61630 61 / 1e-11 AP2_ERF CRF6 cytokinin response factor 6 (.1) AT1G22190 60 / 2e-11 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) AT1G43160 57 / 6e-11 AP2_ERF RAP2.6, RAP2.06 related to AP2 6 (.1) AT5G53290 59 / 7e-11 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT5G65130 58 / 7e-11 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G50080 57 / 1e-10 AP2_ERF ERF110 ethylene response factor 110 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036556 [exp] 141 / 4e-44 AT5G19790 104 / 2e-28 related to AP2 11 (.1) Lus10008291 [exp] 82 / 3e-19 AT5G19790 106 / 3e-26 related to AP2 11 (.1) Lus10036793 [exp] 80 / 4e-18 AT5G19790 115 / 4e-29 related to AP2 11 (.1) Lus10037137 [exp] 79 / 7e-18 AT5G19790 116 / 2e-29 related to AP2 11 (.1) Lus10001298 [exp] 74 / 1e-17 AT5G19790 118 / 1e-33 related to AP2 11 (.1) Lus10012703 [exp] 78 / 2e-17 AT5G19790 119 / 3e-31 related to AP2 11 (.1) Lus10030430 [exp] 77 / 4e-17 AT5G19790 115 / 1e-29 related to AP2 11 (.1) Lus10013764 [exp] 76 / 4e-17 AT5G19790 132 / 6e-37 related to AP2 11 (.1) Lus10039171 [exp] 75 / 1e-16 AT5G19790 133 / 3e-37 related to AP2 11 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G076702 [exp] 93 / 2e-23 AT5G19790 74 / 5e-15 related to AP2 11 (.1) Potri.002G153500 [exp] 89 / 5e-22 AT5G19790 79 / 6e-17 related to AP2 11 (.1) Potri.001G453100 [exp] 78 / 9e-18 AT5G19790 71 / 5e-14 related to AP2 11 (.1) Potri.008G091300 [exp] 77 / 3e-17 AT5G19790 80 / 5e-17 related to AP2 11 (.1) Potri.017G087800 [exp] 74 / 2e-16 AT5G19790 89 / 3e-20 related to AP2 11 (.1) Potri.003G220200 [exp] 73 / 3e-16 AT5G19790 164 / 1e-49 related to AP2 11 (.1) Potri.013G056700 [exp] 71 / 1e-15 AT5G19790 105 / 4e-27 related to AP2 11 (.1) Potri.011G148900 [exp] 71 / 2e-15 AT5G19790 65 / 5e-12 related to AP2 11 (.1) Potri.019G036100 [exp] 69 / 7e-15 AT5G19790 98 / 3e-24 related to AP2 11 (.1) Potri.001G004700 [exp] 69 / 1e-14 AT5G19790 112 / 1e-29 related to AP2 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10041372 pacid=23179944 polypeptide=Lus10041372 locus=Lus10041372.g ID=Lus10041372.BGIv1.0 annot-version=v1.0 ATGGCAGGAAACATTCCAGTGCAGGGCCAGATCAGCACCTCCACCGCTGTGAAACCCCGCCGGTTCGTCGGAGTTAGGCAGAGGCCTTCCGGGAGATGGG TTGCCGAAATCAAAGACTCCTCCCAGCGTGTCAGGCTATGGCTTGGAACCTACGACACCCCTGAAGAAGCCGCCAGAGCTTATGACGAAGCTGCCCGCGC CCTCCGCGGCGATAATGCTCGCACCAATTTCGCTTCCTCTTCCGATTCCAAGACCGCCGCAACCAACGCCCGCCGCGGGCGCCCTCCCCCTCCACACTCT TGCGTCATCGTCCGCGTCAGCGTCTGCGTCCCTGGCGTCCCCGAATCCGAATCCTTTCTCGTCTCTGAAGGCGAAGCTGAGCAAGAATCTGCAGAGCATA ATGGCAAGGACTAG
AA sequence Show only first row Show all	>Lus10041372 pacid=23179944 polypeptide=Lus10041372 locus=Lus10041372.g ID=Lus10041372.BGIv1.0 annot-version=v1.0 MAGNIPVQGQISTSTAVKPRRFVGVRQRPSGRWVAEIKDSSQRVRLWLGTYDTPEEAARAYDEAARALRGDNARTNFASSSDSKTAATNARRGRPPPPHS CVIVRVSVCVPGVPESESFLVSEGEAEQESAEHNGKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10041372 [exp]	0	1
					Lus10041371 [exp]	1.0	0.9304
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Lus10029634 [exp]	4.1	0.8543
AT3G17130			Plant invertase/pectin methyle...		Lus10017074 [exp]	6.8	0.8471
AT4G29680			Alkaline-phosphatase-like fami...		Lus10032681 [exp]	8.0	0.8945
AT5G40190			RNA ligase/cyclic nucleotide p...		Lus10039477 [exp]	8.1	0.8570
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10025819 [exp]	10.4	0.8868
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032482 [exp]	12.6	0.8663
AT1G70090		GATL9, LGT8	GALACTURONOSYLTRANSFERASE-LIKE...		Lus10013296 [exp]	13.1	0.8664
AT3G21890	CO		B-box type zinc finger family ...		Lus10031583 [exp]	16.1	0.8631
AT3G18490			Eukaryotic aspartyl protease f...		Lus10032481 [exp]	16.5	0.8618

Compare expression of checked genes

Lus10041372 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.