Plant FIBer expression Database

Lus10041401 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G19500 142 / 1e-36 Tryptophan/tyrosine permease (.1)
AT2G33260 93 / 4e-20 Tryptophan/tyrosine permease (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036527
[exp]
766 / 0 AT5G19500 173 / 3e-48 Tryptophan/tyrosine permease (.1)
Lus10036099
[exp]
148 / 4e-39 AT5G19500 588 / 0.0 Tryptophan/tyrosine permease (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G221900
[exp]
501 / 2e-174 AT5G19500 141 / 2e-36 Tryptophan/tyrosine permease (.1)
Potri.001G224950
[exp]
146 / 2e-38 AT5G19500 606 / 0.0 Tryptophan/tyrosine permease (.1)
Potri.008G040400
[exp]
113 / 4e-30 AT5G19500 58 / 2e-11 Tryptophan/tyrosine permease (.1)
Potri.019G031800
[exp]
79 / 2e-15 AT2G33260 567 / 0.0 Tryptophan/tyrosine permease (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0062 APC PF03222 Trp_Tyr_perm Tryptophan/tyrosine permease family
Representative CDS sequence
>Lus10041401 pacid=23179775 polypeptide=Lus10041401 locus=Lus10041401.g ID=Lus10041401.BGIv1.0 annot-version=v1.0
ATGATTCTATTCACTCATCTCCAGACTTCTCTTCCTCTATCACCCATGGAATTTCACTGTTTGTCTTCTTCTTCTTCTTCTTCTTCTTCAGTTCACTGGC
TCAAAACCCATCACAAGATTCTCCCATCCTGGACAGTCAACCATAAGAGAAACCCCAGAATTTGCTTCAACCTTAAAATCTGTGGCTATCCTAGTTCCAA
TTGCAAATCTGGGATAGTGCAAAGAAGATGGCTTTGCACAACAAAGAAAAGCAGCAAGGGTTCTGTAGAGACGACGAGCAGTGATGACCCAATTGCTGAA
GTTGCAGAGAAAAAAGGAACCATTGGTGGAGCAGTTGCGTTGATAATTGGCACAAGTATTGGCTCAGGCATACTTGCTCTCCCCAACAAAGCTTCCCCTG
CGGGTATAATTCCAAGCTCCATCTCCATGATAGTATGCTGGGGCTTCTTACTAATTGAGGCAATTTTACTAGTGGAGCTTAATGTGGGATTAAGGAGGAA
AAAGGGGAAAAGAGAAGATGGGAAAGGAATTGAGGTTATTTCCATTAGAACAATGGCTCAAGATACATTAGGAGATTGGGGTGGTAATTTGGCCACCGTT
ACTTATGTTTTCTTGGGCTACACTTCCATGGTTGCTTATGCTTCCAAGTCCGGGGAGATTCTATTCCATTTGTTGAATATTCCGGAAACTGTGTCTGGAT
GTGTTTTCACTCTTGTTTTCACCTTGTTGATCTCCGTTAGTGGGACTGAAACAACTGACCAAGTGAACCAGTGGCTCACTGCCTCCATGATAGGTTTGCT
TCTTTGTATTGAAGTGGTCTGTGTTGTGTTTGGAGGGTGGCCTGGGTTGATGGAGGGAGGTGGGAATTGGGGAAAAGTTCCAGATACAGTTCCTGTCATG
ATTTTCTCACTAGTCTACCATGATCTTGCACCCGTTCTATGTGCTTATTTGGGTGGTGATATTGGACGATTAAGGACATCAATTTTGATTGGGAGCTTTG
TTCCATTGGTGGGATTGCTTGTTTGGGATGCAATAGCACTTGGCCTTTCAGCTCAGGCTCATCAAGTTGGTGGTGACCCTGTTGAATTACTTGTGAACGT
GGGATGGACCGGTGTTCCATTAATGGTTCAGGCCTTCTCGTTGGTAGCGGTAGGGACATCGCTAATCGGCACTCTCCTTGGCTTCTCTGAGTTCTTCAAA
GAACAGATCCGGAACCTCTCATTGACTTCATCAAAGGAACCGTCAGACATAACACTTAGAACAAGCTTCACAGCAATGACAATGGCAGTTGCTCCAGCGC
TGGTTGTCTCAGCCACAGTTCCGGATGCATTCTCTGCTGCTACTGATATTGCAGGAGGCTACTGCATGACCATGTTGTACGGAGTTCTTCCGCCGGCAAT
GGTATGGGCTGTACGAGGAAACAAGGGATTGTCAGGAACCAAGACTGTGTTACTTGCTGGAGTCTCCACATTTGCTTGTGGAATAGTGGTGGAGCAATTA
TTACATGACTTCTCTGCCCTAATTTGCCATAACTAA
AA sequence
>Lus10041401 pacid=23179775 polypeptide=Lus10041401 locus=Lus10041401.g ID=Lus10041401.BGIv1.0 annot-version=v1.0
MILFTHLQTSLPLSPMEFHCLSSSSSSSSSVHWLKTHHKILPSWTVNHKRNPRICFNLKICGYPSSNCKSGIVQRRWLCTTKKSSKGSVETTSSDDPIAE
VAEKKGTIGGAVALIIGTSIGSGILALPNKASPAGIIPSSISMIVCWGFLLIEAILLVELNVGLRRKKGKREDGKGIEVISIRTMAQDTLGDWGGNLATV
TYVFLGYTSMVAYASKSGEILFHLLNIPETVSGCVFTLVFTLLISVSGTETTDQVNQWLTASMIGLLLCIEVVCVVFGGWPGLMEGGGNWGKVPDTVPVM
IFSLVYHDLAPVLCAYLGGDIGRLRTSILIGSFVPLVGLLVWDAIALGLSAQAHQVGGDPVELLVNVGWTGVPLMVQAFSLVAVGTSLIGTLLGFSEFFK
EQIRNLSLTSSKEPSDITLRTSFTAMTMAVAPALVVSATVPDAFSAATDIAGGYCMTMLYGVLPPAMVWAVRGNKGLSGTKTVLLAGVSTFACGIVVEQL
LHDFSALICHN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G19500 Tryptophan/tyrosine permease (... Lus10041401
[exp]
0 1
AT5G19500 Tryptophan/tyrosine permease (... Lus10036527
[exp]
1.0 0.9624
AT4G18240 ATSS4, SSIV ARABIDOPSIS THALIANA STARCH SY... Lus10042837
[exp]
2.0 0.9343
AT5G22000 RHF2A, CIC7E11 RING-H2 group F2A (.1.2.3) Lus10016195
[exp]
3.0 0.9144
AT5G24300 SSI1, SSI, ATSS... STARCH SYNTHASE 1, Glycogen/st... Lus10022398
[exp]
3.5 0.8895
AT2G34090 MEE18 maternal effect embryo arrest ... Lus10013927
[exp]
3.9 0.8591
AT4G18130 PHYE phytochrome E (.1) Lus10011967
[exp]
6.9 0.8818
AT2G38330 MATE efflux family protein (.1... Lus10012227
[exp]
7.2 0.9034
AT1G11720 ATSS3 starch synthase 3 (.1.2) Lus10020044
[exp]
7.3 0.8495
AT1G73990 SPPA1, SPPA signal peptide peptidase (.1) Lus10021721
[exp]
9.2 0.8860
AT3G46970 ATPHS2, PHS2 Arabidopsis thaliana alpha-glu... Lus10001200
[exp]
9.9 0.8596

Lus10041401 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.