Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52250 491 / 4e-147 MYB Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036515 [exp] 2518 / 0 AT3G52250 541 / 2e-164 Duplicated homeodomain-like superfamily protein (.1) Lus10040386 [exp] 1224 / 0 AT3G52250 573 / 2e-175 Duplicated homeodomain-like superfamily protein (.1) Lus10023504 [exp] 1208 / 0 AT3G52250 577 / 3e-177 Duplicated homeodomain-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G220000 [exp] 1006 / 0 AT3G52250 645 / 0.0 Duplicated homeodomain-like superfamily protein (.1) Potri.008G041900 [exp] 959 / 0 AT3G52250 645 / 0.0 Duplicated homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10041413 pacid=23179907 polypeptide=Lus10041413 locus=Lus10041413.g ID=Lus10041413.BGIv1.0 annot-version=v1.0 ATGCCGCCGGAGCCATTGCCCTGTGACCGGAAGAAGCACGAGAGGTCCGAGTCGTCTTCTTCATTAGGGTCAACCCCTCGTTGGAGGGACTGGCCCGCGG GTCACTATGGTTCCTACCGTGACTTTTCTCCTCGCTGGGCAGGAGGATCCAGCGAGTTCCGCAGACCTTCCGGTCATGGTAAGCAAGGCGGGTGGCACCT GTGTGCTGATGAATCTGGTTATGGGTATGGCCCTTCCAGGTCCAACGACAAGATGCAGGAAGATAATAATGGAAGGCCCCTATTTTCACGAGGGGATGGA AAGTATGGCAGGAGTGGAAGAGATAACAGAGGGCCTTATGGTCAGAGAGACTGGAGAGCACATTCATGGGATATGAGCAATGGATCCGCGAATGGACCTG GAAGACCCTATGATGTGAGTAATGATCAGAGGTCAGTTGATGATATGCTAACATGCCCCCCTTCACATCCTCCCAACTCGGACTTCGTAAACACATGGGA TCAGCTTCAGTTAAGACAGCAGCATGGCAATAATAAGGATGGAGGCAACGCCTTGGGCTCTGGCCAAAGGGGTGATAAAGATAACTCAATGGATTGGAAG CCTCTAAAGTGGACTCGTACAGGAAGCTTGCCTTCCAGGGGGTCTGGATATAGCCACTCCAGTAGTTCAATGAATCTTGGGGCTGTGAAGGCTAATGGTG GAAAGACTGAGATGATACCGAAGAATGGGACCCCAATTCGTTCCACTTCAGGAGATGTGACTGTTGCCCGTGCTGCTTCAGTGACATTGTCTGATGAGAC TATGTCAAGAAAGAAGCCACGCCTTAAATGGGGTGAGGGACTGGCCAAGTATGAGAAGAAAAGTGTTGAAGGACCTGAGACTAGTGTGACCGGAGATTAT ACCGCCTTGTTTACTAATAGCTTGGAACCTGTTCACTCGAGAAGCTCAAGCTTGCCTGACAAAAGCCCAAAGCAGATGGTTTCTCCAGAATGTGTTTCTC CTGCAACTCCTTCCTCCGTTGCTTGTAGTTCCTCGCCAGGTGTTGAAGATAAAGTTTTTTGTCCGGCAGTCAGTGTTGATAATGATGCTAGTAATTTATG TGGTTCTCCTAGTGTTGACTCTCTAGGTCGTGAGGGGTTTTCTTTCAGTTTAGAAAAGATGGATATGGGTTCTATTCCTAATTTGGGGTCCTCACTCATT GAGATGATTCGGTCAGAAGATTTATGTATAGTGGACTCTTGTTTTGAGAAGTCAACTGGAATGAATAAGTTACTTGTTTGGAAAGGCAATGCTTTGAAGG CATTGGAAACAACAGAGACTGAGATAGATATTCTTGAAAATGAACTCAAGTCACTGAAGTCTGATTCAAAAAGCAAGCTTTTCGGCCCCTCACAATCTGA TTCCCTAGCAATAAGTGGTGATGCCATTGCTTGCAGTGAACAGGGAACTTTATGCCGTGATGGCCTACGTCGTCCTGTATCCATTATGGATGAAGCTGTG GATGGAATTCGTAATCCGGATGATACTTTCGATGATGGTTATGCCAAGGATGACGACATTGATAGTCCTGGGACTGCTACATCTAAGTTTGTTGAACCTG TGATATCTGTGAGAACTCCATCTGATATGGTGAGATGCACTCAACATTCTGCTGTTCCTGCAGATGAATCTTCAAATTCGATGGTAGGGAAAGAAAGTGC ACTTGCAGCATGTAATGTTAATATCATACGCTGCAACAATAATGCACTTCTCTCTGCTAGTAAGAGTTCTGTGGAAGATGGATACTCTAACCTATGTACT GCTATATTAGCCTCAAATAAGGAATCTGCTAGTACAGTAGGTGAAGAATTTTATAGGTTATTACCTAGGGATCCTTGCTCGGTTAATCATTCAGGAGTTG TGAATATATTGTCCGGGCGAACTGATGCGTTGGTTATGAAAAAATTCTTAACGAGGAGATGCTTGATGAAGATTAAGGAGAAAATTGTGGCCCTGAAGTT CAAAGTGTTACAACATCTGTGGAGGGAGGATATGCACTTGCTCTCTGTAAAGAAGTTCAAGGCAAAGTCTCAGAAGAAATTTGAGTCAAGCTTGCGGCCT ATTCATAATATGCATAAGAAGCACCGGTCTTCATCTCGCGTGCGAATTTGTTCTCCTCGCAGTATGAGCCTGGTTCTTTCTCCGGAGATGCTAAATTTCA GTAGAAAGTTGCTTGCAGATTGCAGTGTCAAAGTTTACAGGGACAACTTGAAAATGCCAATGCAGATTTTGGATGACAGCGAGAGGAAAGTATCAATGTT CATTTCTGGCAATGGATTAGTTGAAGATCCCTTTGCTGTTGAGAGGGAAAGAGCAATGATAAATTGTTGGAGTTTGGAAGAGCGTGACATCTTTATTGAT AAGCTAGCCATATGTGGTAAGGATTTTAAGAAAATTTCTTTCTATCTTGAACACAAGACTACTGCAGACTGCATTGAATTTTACTACAAAAATCATAAGT CTGACTCTTTTGGGAAAGTCAAGAAGAACAAGCAATCCAAGTCTTTGACAAATTACTTGATGTCATCCGGTAAGAAGTGGAATCGTGAGATGGGCACAGC TCCACTTGATATTTTAGGTGCTGCCTCGGTGGTAGCTGCTGATCCTGACAGGAAAATGGGAAGTAGGAAAGTGTCTTCTAGTAAAATCTTTATCAGAGGC TATAATAAATGCAAACTCTTGCAAGGTGATGATGGTAATTCGGAAAGGTTAAACAACTATGATGTCCTTGTGAATGAAAGAGAAACCGCGGCTGCTGATG TGCTAGCTGGTATCAGTGGTTCTATGAGTTCTTGTATCACTACTTCTGCTGATCGTGCTGAGGGGTTTTATGACTATAATGCACGGAGGAGAGATACCGC TATTAGACGTCCCTCAATATCTGATGTAACCCAGAATGTCGATGAAGAGACATGTTCTGATGAGAGCTGTGGCGAAATGGATCCTGCTGATTGGACAGAT GAGGAGAAAACAGCTTTTGTTCGGGCCGTTTCTTTGTACGGAAAGGATTTTGCATTTATTTCCCGTTGCGTGCGGACAAGGTCTCAGGAGCAGTGTAAGG TGTTCTTTAGTAAAGCAAAGAAGTGTCTTGGGTTGGACCAGATTCTCTCTGGCATAGGAATGATAGATCCATCATTAAGTGAGGATGCAAATGAAGGTGA GAGTGACATGGAAGATGCCATTGTGGATGGCTCTGAAATTCCTTCTATGTTGGACCTGGACCCACCCCCTAGACTTATGTGCACTGCTGGGAATTCAAAG CAGGATGTTTCTGATGGTGGGGTTGGAATCAATCTTGAAACTGATTTGAATGTATCCGATGAGAAAGACGTTGCAGGAGCTATAGAAGAGGAGAATTTGA TGGCTGTAGAAAATGTAAAAGGTCACTTAGTCCAGTCAACTCATCTCTCTGATGGTGAAGTCATTAATGGTTTTGGTCAAATGAATGGTCAGACAGTTCA AATAGAATCTGGTGTTACAGAAGGTGAAAGAGATTGTCAAACCAAAAAAGTCCAACATCTTCCTTTGGATATGGGCTCTTCTTCAGATGACAGTCCTCTT GTGGGAAATATTACTCAGAGACAAGTTGAAGTGAATTCTGTGGAGAACAGTTCGTCAATGCAATCAAATAATAATTTGGTTGGTGCTGTTTCTGTGACAT TGAACTCTGCTGCGATACACTGTCATAAAGCGCTCGAGTTGGGGGAGATCTCAGGCAGTGTACAAGAGAATCGTAGTAAGCAGGATGGAAGTGGCTCTGT GCAGCCTTCTGTATGTTGCCACCCTGTGGTGAACCATGGGGAGTATTCTGAGAGTGGCTGTAGTGAAGTCCAAACTCTCACGGAGAAAGTGACCATGGGG GATATTTCTGATGCTAAGCTCCTTTTGAACGCTGAACAGTTTATGGGCAACCAGTTGGTAGCTGAGGAGGGCGGCTCCTGTCTTGAGAATTCCAGTAATT CTGAGGGTCAATGTTCGGTTCCTGAACTTCCCCTTCTGAGCCAGCCTGGAAGTTCAACGAACATGGAAAAACGAAGCAGGAATGGAGATGTTAAACTCTT TGGGAAAATACTGAGTAATCCTGTATCATCATCATCATCATCACAGAAGCCAGTTGCTGCACATGAGAGTGATGAAAAGAGCACGCAGCCTCAGAGAACC TTAAAATTCAATGGTGATCACAGTGCTGATGATACTTCACTGAATTTGGATAAAAACAATAGTGCAGGAGTGGAAAAAGTTCCGATTAGGAGTTACGGTT TCTGGGATGGAAGCAGAATACAGACGGGGCTGACTTCGTTGCCGGATTCAGCCACTCTACTTGCCAAGTATCCTGCTGCATTCACCAATTTTCAGGTGTC ATCTTCACCGAAGCTTGATCCAGTAGCATTGGCAACAACTTCCAAGAACATTGAACGAAGTATGAATGGAGTAGTTAGTATGCATCAAAGGGGGGGACAT AAGCAGCAGCAGTAA
AA sequence Show only first row Show all	>Lus10041413 pacid=23179907 polypeptide=Lus10041413 locus=Lus10041413.g ID=Lus10041413.BGIv1.0 annot-version=v1.0 MPPEPLPCDRKKHERSESSSSLGSTPRWRDWPAGHYGSYRDFSPRWAGGSSEFRRPSGHGKQGGWHLCADESGYGYGPSRSNDKMQEDNNGRPLFSRGDG KYGRSGRDNRGPYGQRDWRAHSWDMSNGSANGPGRPYDVSNDQRSVDDMLTCPPSHPPNSDFVNTWDQLQLRQQHGNNKDGGNALGSGQRGDKDNSMDWK PLKWTRTGSLPSRGSGYSHSSSSMNLGAVKANGGKTEMIPKNGTPIRSTSGDVTVARAASVTLSDETMSRKKPRLKWGEGLAKYEKKSVEGPETSVTGDY TALFTNSLEPVHSRSSSLPDKSPKQMVSPECVSPATPSSVACSSSPGVEDKVFCPAVSVDNDASNLCGSPSVDSLGREGFSFSLEKMDMGSIPNLGSSLI EMIRSEDLCIVDSCFEKSTGMNKLLVWKGNALKALETTETEIDILENELKSLKSDSKSKLFGPSQSDSLAISGDAIACSEQGTLCRDGLRRPVSIMDEAV DGIRNPDDTFDDGYAKDDDIDSPGTATSKFVEPVISVRTPSDMVRCTQHSAVPADESSNSMVGKESALAACNVNIIRCNNNALLSASKSSVEDGYSNLCT AILASNKESASTVGEEFYRLLPRDPCSVNHSGVVNILSGRTDALVMKKFLTRRCLMKIKEKIVALKFKVLQHLWREDMHLLSVKKFKAKSQKKFESSLRP IHNMHKKHRSSSRVRICSPRSMSLVLSPEMLNFSRKLLADCSVKVYRDNLKMPMQILDDSERKVSMFISGNGLVEDPFAVERERAMINCWSLEERDIFID KLAICGKDFKKISFYLEHKTTADCIEFYYKNHKSDSFGKVKKNKQSKSLTNYLMSSGKKWNREMGTAPLDILGAASVVAADPDRKMGSRKVSSSKIFIRG YNKCKLLQGDDGNSERLNNYDVLVNERETAAADVLAGISGSMSSCITTSADRAEGFYDYNARRRDTAIRRPSISDVTQNVDEETCSDESCGEMDPADWTD EEKTAFVRAVSLYGKDFAFISRCVRTRSQEQCKVFFSKAKKCLGLDQILSGIGMIDPSLSEDANEGESDMEDAIVDGSEIPSMLDLDPPPRLMCTAGNSK QDVSDGGVGINLETDLNVSDEKDVAGAIEEENLMAVENVKGHLVQSTHLSDGEVINGFGQMNGQTVQIESGVTEGERDCQTKKVQHLPLDMGSSSDDSPL VGNITQRQVEVNSVENSSSMQSNNNLVGAVSVTLNSAAIHCHKALELGEISGSVQENRSKQDGSGSVQPSVCCHPVVNHGEYSESGCSEVQTLTEKVTMG DISDAKLLLNAEQFMGNQLVAEEGGSCLENSSNSEGQCSVPELPLLSQPGSSTNMEKRSRNGDVKLFGKILSNPVSSSSSSQKPVAAHESDEKSTQPQRT LKFNGDHSADDTSLNLDKNNSAGVEKVPIRSYGFWDGSRIQTGLTSLPDSATLLAKYPAAFTNFQVSSSPKLDPVALATTSKNIERSMNGVVSMHQRGGH KQQQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10041413 [exp]	0	1
AT3G54460			SNF2 domain-containing protein...		Lus10024159 [exp]	3.6	0.9488
ATMG01360		ATMG01360.1, CO...	cytochrome oxidase (.1)		Lus10009204 [exp]	6.8	0.9479
ATMG01360		ATMG01360.1, CO...	cytochrome oxidase (.1)		Lus10004084 [exp]	8.1	0.9471
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10014166 [exp]	8.9	0.9242
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10000460 [exp]	9.6	0.9470
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10000459 [exp]	10.5	0.9429
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10009720 [exp]	12.0	0.9418
AT5G42390		SPP	stromal processing peptidase, ...		Lus10021970 [exp]	14.1	0.9039
ATMG00510		ATMG00510.1, NA...	NADH dehydrogenase subunit 7 (...		Lus10015033 [exp]	15.6	0.9366
AT2G28290		CHR3, SYD	SPLAYED, CHROMATIN REMODELING ...		Lus10033980 [exp]	21.5	0.9393

Compare expression of checked genes

Lus10041413 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.