Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68320 251 / 2e-82 MYB BW62C, BW62B, AtMYB62 myb domain protein 62 (.1) AT1G25340 235 / 6e-76 MYB ATMYB116 myb domain protein 116 (.1.2) AT1G48000 206 / 2e-65 MYB ATMYB112 myb domain protein 112 (.1) AT2G47190 204 / 4e-64 MYB AtMYB2 myb domain protein 2 (.1) AT5G49620 202 / 1e-62 MYB ATMYB78 myb domain protein 78 (.1.2) AT3G27810 196 / 2e-61 MYB AtMYB3, ATMYB21 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) AT3G06490 195 / 5e-60 MYB BOS1, AtMYB108 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) AT5G40350 190 / 2e-59 MYB ATMYB24 myb domain protein 24 (.1) AT3G01530 180 / 1e-55 MYB ATMYB57 myb domain protein 57 (.1) AT3G30210 169 / 1e-50 MYB ATMYB121 myb domain protein 121 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034338 [exp] 512 / 0 AT1G68320 262 / 2e-86 myb domain protein 62 (.1) Lus10037818 [exp] 222 / 3e-70 AT3G06490 273 / 4e-90 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10009037 [exp] 218 / 1e-69 AT1G68320 231 / 1e-75 myb domain protein 62 (.1) Lus10017096 [exp] 218 / 1e-69 AT3G06490 259 / 4e-86 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Lus10038062 [exp] 207 / 3e-65 AT2G47190 226 / 1e-73 myb domain protein 2 (.1) Lus10009996 [exp] 202 / 3e-63 AT2G47190 221 / 3e-71 myb domain protein 2 (.1) Lus10022259 [exp] 198 / 3e-62 AT3G27810 243 / 3e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Lus10032129 [exp] 185 / 2e-57 AT5G40350 221 / 2e-73 myb domain protein 24 (.1) Lus10014557 [exp] 183 / 1e-56 AT5G40350 224 / 1e-74 myb domain protein 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G122100 [exp] 286 / 2e-95 AT1G68320 274 / 1e-91 myb domain protein 62 (.1) Potri.010G123000 [exp] 264 / 7e-87 AT1G68320 268 / 4e-89 myb domain protein 62 (.1) Potri.012G055600 [exp] 249 / 5e-81 AT1G68320 244 / 1e-79 myb domain protein 62 (.1) Potri.015G046200 [exp] 249 / 9e-81 AT1G25340 241 / 2e-78 myb domain protein 116 (.1.2) Potri.008G101400 [exp] 226 / 6e-72 AT3G06490 278 / 2e-92 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.010G149900 [exp] 223 / 6e-71 AT3G06490 281 / 9e-94 BOTRYTIS-SUSCEPTIBLE1, myb domain protein 108 (.1) Potri.014G117000 [exp] 212 / 6e-67 AT5G49620 233 / 1e-75 myb domain protein 78 (.1.2) Potri.002G191800 [exp] 208 / 2e-65 AT5G49620 231 / 1e-74 myb domain protein 78 (.1.2) Potri.017G071500 [exp] 194 / 3e-61 AT3G27810 233 / 2e-78 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1) Potri.001G346600 [exp] 191 / 5e-60 AT3G27810 242 / 1e-81 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10041435 pacid=23146821 polypeptide=Lus10041435 locus=Lus10041435.g ID=Lus10041435.BGIv1.0 annot-version=v1.0 ATGCAAACATTGAGAGCACCTTTCATGAATCTGCAGGCTCATGGAGGAAATCATGAAGAGGAAAGCAGTGATCAGAATCATTCAGAGGTAAGGAGAGGCC CTTGGACACTTGAAGAAGACACTCTTCTCTCCCATTACATTGCCAGGCATGGCGAAGGCCGCTGGAACATGTTGGCCAAATGTGCTGGATTGAAGAGGAC TGGGAAGAGCTGCAGGCTGAGATGGCTAAACTATCTGAAACCAGACATTAAGAGAGGGAACTTAACTCCAAAAGAGCAGCTTTTGATCTTGGAACTTCAT TCCAAGTGGGGTAACAGGTGGTCGAGGATAGCGCAACATCTACCGGGAAGAACGGACAACGAGATAAAGAATTACTGGAGGACAAGGGTGCAGAGGCAGG CAAGGCAGCTCCACATTGAATCCAACAGCAAGCTGTTCCTTGATGCTGTCAGGTGTTACTGGGTTCCAAGGCTCCTCCAGAAAGTTGAGCAGCAAATTAA CTACCCACCACAACAACAACAAGAAATAGAATCTCATCATCGAATAACCAAAGTGGTTGCTCCTGATGATTCTGCTGCTTCTCAGGAAGTAGTTATCCCT TCTTCTTACGAACAAGTAGAAGAAACCAACTTGTCGAATTCAGCTTCGATCACTGTGCTTTCCACGGATTCCACTACGATCTCCTACTATCAGCAGCCGC CTCCTGAGAACGTCATGGAATCTGAATTGATTGGCTTCCCCGTGGAGTACAGTTACTACAACAACAACAACAACAATAGCAGCAGCAACATGATGATGCA GAATTACGATTATGGGATGGACGGGTTTGATGATGCCATGGCTCCTCCCTTAATGTATCATGATAATGAGATTAATAATCCATCCCAATATCCAGAAATA ATGTCAGCAGTTTCAGAACAGGAATGGCAGATGGGGGACAACAGCTACTATGATTCTCTGTGGAACTTGGATGACACGTGGCAGTACAGGGGCATGAGAG AAGAAATGGGCATCTAG
AA sequence Show only first row Show all	>Lus10041435 pacid=23146821 polypeptide=Lus10041435 locus=Lus10041435.g ID=Lus10041435.BGIv1.0 annot-version=v1.0 MQTLRAPFMNLQAHGGNHEEESSDQNHSEVRRGPWTLEEDTLLSHYIARHGEGRWNMLAKCAGLKRTGKSCRLRWLNYLKPDIKRGNLTPKEQLLILELH SKWGNRWSRIAQHLPGRTDNEIKNYWRTRVQRQARQLHIESNSKLFLDAVRCYWVPRLLQKVEQQINYPPQQQQEIESHHRITKVVAPDDSAASQEVVIP SSYEQVEETNLSNSASITVLSTDSTTISYYQQPPPENVMESELIGFPVEYSYYNNNNNNSSSNMMMQNYDYGMDGFDDAMAPPLMYHDNEINNPSQYPEI MSAVSEQEWQMGDNSYYDSLWNLDDTWQYRGMREEMGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10041435 [exp]	0	1
AT2G20980		MCM10	minichromosome maintenance 10 ...		Lus10027845 [exp]	5.3	0.7879
AT3G03470		CYP89A9	"cytochrome P450, family 87, s...		Lus10020361 [exp]	7.1	0.6880
					Lus10036026 [exp]	12.4	0.6216
AT5G04350			Plant self-incompatibility pro...		Lus10029381 [exp]	15.8	0.5930
AT2G25270			unknown protein		Lus10014341 [exp]	17.3	0.6124
					Lus10028048 [exp]	19.9	0.5876
					Lus10026785 [exp]	21.5	0.5876
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10000008 [exp]	23.0	0.5876
AT1G47550		SEC3A	exocyst complex component sec3...		Lus10001022 [exp]	24.4	0.5876
					Lus10001123 [exp]	25.7	0.5876

Compare expression of checked genes

Lus10041435 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.