Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68550 117 / 3e-30 AP2_ERF CRF10 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) AT3G25890 93 / 3e-21 AP2_ERF CRF11 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) AT4G11140 79 / 1e-16 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT1G12890 75 / 1e-15 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G49120 76 / 2e-15 AP2_ERF CRF9 cytokinin response factor 9, Integrase-type DNA-binding superfamily protein (.1) AT5G44210 74 / 2e-15 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT3G15210 73 / 6e-15 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G28370 72 / 6e-15 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT5G13330 72 / 1e-14 AP2_ERF RAP2.6L related to AP2 6l (.1) AT2G33710 72 / 1e-14 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034316 [exp] 476 / 2e-170 AT1G68550 151 / 2e-43 cytokinin response factor 10, Integrase-type DNA-binding superfamily protein (.1.2) Lus10035018 [exp] 279 / 2e-92 AT3G25890 150 / 2e-42 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Lus10021678 [exp] 277 / 7e-92 AT3G25890 154 / 4e-44 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Lus10027573 [exp] 86 / 1e-18 AT4G27950 209 / 1e-64 cytokinin response factor 4 (.1) Lus10039324 [exp] 85 / 4e-18 AT4G27950 210 / 8e-65 cytokinin response factor 4 (.1) Lus10017550 [exp] 78 / 5e-16 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10016827 [exp] 77 / 9e-16 AT3G16770 183 / 4e-57 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10037487 [exp] 73 / 7e-15 AT3G16770 156 / 2e-47 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) Lus10019414 [exp] 73 / 7e-15 AT1G15360 207 / 1e-67 WAX INDUCER 1, SHINE 1, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G120100 [exp] 210 / 4e-66 AT3G25890 124 / 4e-33 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Potri.010G125600 [exp] 201 / 4e-62 AT3G25890 95 / 6e-22 cytokinin response factor 11, Integrase-type DNA-binding superfamily protein (.1.2) Potri.012G032900 [exp] 78 / 6e-16 AT4G27950 214 / 6e-67 cytokinin response factor 4 (.1) Potri.004G047600 [exp] 76 / 6e-16 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.009G101900 [exp] 74 / 5e-15 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.015G023200 [exp] 75 / 6e-15 AT4G27950 211 / 9e-66 cytokinin response factor 4 (.1) Potri.019G131300 [exp] 74 / 8e-15 AT4G27950 139 / 2e-38 cytokinin response factor 4 (.1) Potri.003G071700 [exp] 75 / 9e-15 AT1G53910 223 / 7e-70 related to AP2 12 (.1.2.3) Potri.001G094800 [exp] 74 / 1e-14 AT4G23750 177 / 2e-52 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Potri.007G043400 [exp] 72 / 1e-14 AT1G28370 91 / 4e-23 ERF domain protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10041456 pacid=23146684 polypeptide=Lus10041456 locus=Lus10041456.g ID=Lus10041456.BGIv1.0 annot-version=v1.0 ATGAGTCCAGTCACTCCATTACCCAAAGTCCAAATGAACACACTCTCATCTGCTGAAGGCTCCTTGTTGGGGTCAAAGGTTCGGAAAGTCCGTGTGATCT ATCAAGATCCTTATGCCACTGATTCCAGCGACGATGAATCTGAGCTGTTCTCTGCTCAAGCTGTCAATAAGAAACCAAAGCGTTTCGTCCGTGAGATTAG CATCCCCTTGGCTGCTGCTGTTTCCCCATCGAGTACTGTTGAGCAGCAATCTTCCTCTCAAGACAGCAGCAAAAGTGTTGTCAAGTCATCTTCCAGAAAG TGGCCTTCTGGTGTTAGACAAAGGAAATGGGGGAAATGGGCTGCTGAGATACGAAACCCTTTCACCAAGTCCAGGACTTGGCTTGGCACTTTCAACACTG CTGAAGAGGCTGCTCATGCTTATGATACCAAGAAGCGAGAATTTGATGCCACTGCTGCTGATTTGACCTCAGATGGCTCTGAAAAGAGCAAAAACTCGCC TGCTGTTGTAGCTGATGTTTCCCCGTCAGCAAGCAAGAACAATCCACTCCGTGGCTCTGTTTCAAATGATAATGACTCTGAGAGTGCTGTGTCTCATAGT TCTTCGCCAGCTTCTGTTGTCGAGTTGGATGGTTTAAGCAAGGATGGGGGTTTCGACTTGATCAACGAAGTTGGTTTGGATGGTTTGGATGCTGTTCCTA TCGTAGGTGATCTGGAGATACCAGATTTGAGTTTCATTGACGAGGCTTTGGGGTCGTCGTGCCCTGTTGATCAAGATCTCGACTTAGGTCTTGATTTCAG CAACATCATCGATGAGTTTGGGAGGATGTATGACGATTTCTGCGGGTTGGACGAAGGGCTGGGCGTCCTTGGGGTACAAGGCGACGTACAAACTGAGCTT CCTGATTATGATTTTGATTTCGGCAGTGAGGAATTCGCGTACCTCGACGATCATCATCAACAACAACCCCTCAACATTGCGTTGTGCCCATAA
AA sequence Show only first row Show all	>Lus10041456 pacid=23146684 polypeptide=Lus10041456 locus=Lus10041456.g ID=Lus10041456.BGIv1.0 annot-version=v1.0 MSPVTPLPKVQMNTLSSAEGSLLGSKVRKVRVIYQDPYATDSSDDESELFSAQAVNKKPKRFVREISIPLAAAVSPSSTVEQQSSSQDSSKSVVKSSSRK WPSGVRQRKWGKWAAEIRNPFTKSRTWLGTFNTAEEAAHAYDTKKREFDATAADLTSDGSEKSKNSPAVVADVSPSASKNNPLRGSVSNDNDSESAVSHS SSPASVVELDGLSKDGGFDLINEVGLDGLDAVPIVGDLEIPDLSFIDEALGSSCPVDQDLDLGLDFSNIIDEFGRMYDDFCGLDEGLGVLGVQGDVQTEL PDYDFDFGSEEFAYLDDHHQQQPLNIALCP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68550	AP2_ERF	CRF10	cytokinin response factor 10, ...		Lus10041456 [exp]	0	1
AT4G27680			P-loop containing nucleoside t...		Lus10022361 [exp]	4.0	0.7328
AT5G24650			Mitochondrial import inner mem...		Lus10005289 [exp]	13.8	0.7279
AT2G03820			nonsense-mediated mRNA decay N...		Lus10023975 [exp]	19.7	0.6845
AT1G18850			unknown protein		Lus10024247 [exp]	21.2	0.6834
AT5G54580			RNA-binding (RRM/RBD/RNP motif...		Lus10014802 [exp]	23.0	0.7000
AT3G04710		TPR10	tetratricopeptide repeat 10, a...		Lus10006559 [exp]	24.7	0.6864
AT5G64830			programmed cell death 2 C-term...		Lus10017236 [exp]	27.2	0.6384
AT5G64830			programmed cell death 2 C-term...		Lus10021075 [exp]	29.2	0.6806
AT1G01290		CNX3	cofactor of nitrate reductase ...		Lus10033117 [exp]	29.8	0.7067
AT1G08410			P-loop containing nucleoside t...		Lus10004103 [exp]	34.3	0.6864

Compare expression of checked genes

Lus10041456 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.